Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01820

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01810 and CSW01_01815 are separated by 204 nucleotidesCSW01_01815 and CSW01_01820 overlap by 34 nucleotidesCSW01_01820 and CSW01_01825 are separated by 6 nucleotides CSW01_01810: CSW01_01810 - tRNA epoxyqueuosine(34) reductase QueG, at 362,316 to 363,425 _01810 CSW01_01815: CSW01_01815 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 363,630 to 364,094 _01815 CSW01_01820: CSW01_01820 - N-acetylmuramoyl-L-alanine amidase, at 364,061 to 365,806 _01820 CSW01_01825: CSW01_01825 - DNA mismatch repair protein MutL, at 365,813 to 367,774 _01825 Position (kb) 364 365 366Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 363.100 kb on + strand, within CSW01_01810at 363.100 kb on + strand, within CSW01_01810at 363.163 kb on - strand, within CSW01_01810at 363.215 kb on + strand, within CSW01_01810at 363.228 kb on + strand, within CSW01_01810at 363.244 kb on - strand, within CSW01_01810at 363.274 kb on + strand, within CSW01_01810at 363.291 kb on + strand, within CSW01_01810at 363.441 kb on - strandat 363.446 kb on - strandat 363.446 kb on - strandat 363.446 kb on - strandat 363.482 kb on + strandat 363.550 kb on - strandat 364.083 kb on + strandat 364.148 kb on + strandat 364.156 kb on - strandat 364.189 kb on + strandat 364.197 kb on - strandat 364.248 kb on + strand, within CSW01_01820at 364.248 kb on + strand, within CSW01_01820at 364.256 kb on - strand, within CSW01_01820at 364.266 kb on - strand, within CSW01_01820at 364.268 kb on - strand, within CSW01_01820at 364.273 kb on - strand, within CSW01_01820at 364.278 kb on - strand, within CSW01_01820at 364.462 kb on - strand, within CSW01_01820at 364.510 kb on - strand, within CSW01_01820at 364.528 kb on + strand, within CSW01_01820at 364.557 kb on + strand, within CSW01_01820at 364.557 kb on + strand, within CSW01_01820at 364.612 kb on - strand, within CSW01_01820at 364.612 kb on - strand, within CSW01_01820at 364.638 kb on - strand, within CSW01_01820at 364.673 kb on - strand, within CSW01_01820at 364.696 kb on + strand, within CSW01_01820at 364.704 kb on - strand, within CSW01_01820at 364.724 kb on + strand, within CSW01_01820at 364.841 kb on - strand, within CSW01_01820at 364.985 kb on + strand, within CSW01_01820at 364.993 kb on - strand, within CSW01_01820at 365.016 kb on - strand, within CSW01_01820at 365.065 kb on + strand, within CSW01_01820at 365.073 kb on - strand, within CSW01_01820at 365.083 kb on + strand, within CSW01_01820at 365.119 kb on + strand, within CSW01_01820at 365.220 kb on - strand, within CSW01_01820at 365.253 kb on + strand, within CSW01_01820at 365.261 kb on - strand, within CSW01_01820at 365.318 kb on + strand, within CSW01_01820at 365.326 kb on - strand, within CSW01_01820at 365.330 kb on + strand, within CSW01_01820at 365.356 kb on + strand, within CSW01_01820at 365.410 kb on + strand, within CSW01_01820at 365.426 kb on + strand, within CSW01_01820at 365.465 kb on - strand, within CSW01_01820at 365.466 kb on - strand, within CSW01_01820at 365.468 kb on + strand, within CSW01_01820at 365.479 kb on + strand, within CSW01_01820at 365.487 kb on - strand, within CSW01_01820at 365.502 kb on + strand, within CSW01_01820at 365.510 kb on - strand, within CSW01_01820at 365.510 kb on - strand, within CSW01_01820at 365.561 kb on - strand, within CSW01_01820at 365.607 kb on + strand, within CSW01_01820at 365.607 kb on + strand, within CSW01_01820at 365.615 kb on - strand, within CSW01_01820at 365.643 kb on + strandat 365.675 kb on + strandat 365.675 kb on + strandat 365.676 kb on - strandat 365.683 kb on - strandat 365.683 kb on - strandat 365.683 kb on - strandat 365.685 kb on + strandat 365.716 kb on - strandat 365.752 kb on + strandat 365.760 kb on - strandat 365.760 kb on - strandat 365.760 kb on - strandat 365.762 kb on + strandat 365.770 kb on - strandat 365.770 kb on - strandat 365.860 kb on + strandat 366.015 kb on - strand, within CSW01_01825at 366.015 kb on - strand, within CSW01_01825at 366.026 kb on - strand, within CSW01_01825at 366.026 kb on - strand, within CSW01_01825at 366.026 kb on - strand, within CSW01_01825at 366.030 kb on + strand, within CSW01_01825at 366.077 kb on + strand, within CSW01_01825at 366.104 kb on + strand, within CSW01_01825at 366.104 kb on + strand, within CSW01_01825at 366.114 kb on + strand, within CSW01_01825at 366.114 kb on + strand, within CSW01_01825at 366.122 kb on - strand, within CSW01_01825at 366.125 kb on + strand, within CSW01_01825at 366.125 kb on + strand, within CSW01_01825at 366.133 kb on - strand, within CSW01_01825at 366.133 kb on - strand, within CSW01_01825at 366.138 kb on + strand, within CSW01_01825at 366.138 kb on + strand, within CSW01_01825at 366.138 kb on + strand, within CSW01_01825at 366.138 kb on + strand, within CSW01_01825at 366.138 kb on + strand, within CSW01_01825at 366.209 kb on + strand, within CSW01_01825at 366.235 kb on + strand, within CSW01_01825at 366.237 kb on - strand, within CSW01_01825at 366.355 kb on - strand, within CSW01_01825at 366.355 kb on - strand, within CSW01_01825at 366.357 kb on + strand, within CSW01_01825at 366.369 kb on + strand, within CSW01_01825at 366.369 kb on + strand, within CSW01_01825at 366.369 kb on + strand, within CSW01_01825at 366.369 kb on + strand, within CSW01_01825at 366.369 kb on + strand, within CSW01_01825at 366.369 kb on + strand, within CSW01_01825at 366.377 kb on - strand, within CSW01_01825at 366.377 kb on - strand, within CSW01_01825at 366.377 kb on - strand, within CSW01_01825at 366.409 kb on - strand, within CSW01_01825at 366.510 kb on + strand, within CSW01_01825at 366.510 kb on + strand, within CSW01_01825at 366.518 kb on - strand, within CSW01_01825at 366.518 kb on - strand, within CSW01_01825at 366.538 kb on + strand, within CSW01_01825at 366.566 kb on + strand, within CSW01_01825at 366.566 kb on + strand, within CSW01_01825at 366.574 kb on - strand, within CSW01_01825at 366.608 kb on - strand, within CSW01_01825at 366.696 kb on - strand, within CSW01_01825at 366.706 kb on + strand, within CSW01_01825at 366.729 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.799 kb on + strand, within CSW01_01825at 366.799 kb on + strand, within CSW01_01825at 366.799 kb on + strand, within CSW01_01825at 366.799 kb on + strand, within CSW01_01825

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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363,100 + CSW01_01810 0.71 +1.2
363,100 + CSW01_01810 0.71 +0.8
363,163 - CSW01_01810 0.76 -1.8
363,215 + CSW01_01810 0.81 -1.9
363,228 + CSW01_01810 0.82 -0.1
363,244 - CSW01_01810 0.84 +0.4
363,274 + CSW01_01810 0.86 -2.2
363,291 + CSW01_01810 0.88 -0.6
363,441 - -0.4
363,446 - -1.1
363,446 - -3.0
363,446 - -0.0
363,482 + +0.1
363,550 - +0.4
364,083 + -0.9
364,148 + -3.0
364,156 - -1.9
364,189 + -1.7
364,197 - -1.1
364,248 + CSW01_01820 0.11 -3.5
364,248 + CSW01_01820 0.11 -0.7
364,256 - CSW01_01820 0.11 -2.6
364,266 - CSW01_01820 0.12 -3.9
364,268 - CSW01_01820 0.12 -3.2
364,273 - CSW01_01820 0.12 -2.1
364,278 - CSW01_01820 0.12 -3.0
364,462 - CSW01_01820 0.23 -3.1
364,510 - CSW01_01820 0.26 -2.5
364,528 + CSW01_01820 0.27 +0.4
364,557 + CSW01_01820 0.28 -2.9
364,557 + CSW01_01820 0.28 -1.6
364,612 - CSW01_01820 0.32 -3.7
364,612 - CSW01_01820 0.32 -3.5
364,638 - CSW01_01820 0.33 -3.8
364,673 - CSW01_01820 0.35 +2.2
364,696 + CSW01_01820 0.36 -1.5
364,704 - CSW01_01820 0.37 -0.6
364,724 + CSW01_01820 0.38 -3.9
364,841 - CSW01_01820 0.45 -3.6
364,985 + CSW01_01820 0.53 -1.3
364,993 - CSW01_01820 0.53 -0.1
365,016 - CSW01_01820 0.55 -0.1
365,065 + CSW01_01820 0.58 -2.8
365,073 - CSW01_01820 0.58 -4.1
365,083 + CSW01_01820 0.59 -1.8
365,119 + CSW01_01820 0.61 -3.3
365,220 - CSW01_01820 0.66 -2.9
365,253 + CSW01_01820 0.68 -4.6
365,261 - CSW01_01820 0.69 +0.4
365,318 + CSW01_01820 0.72 -0.3
365,326 - CSW01_01820 0.72 +0.1
365,330 + CSW01_01820 0.73 -1.5
365,356 + CSW01_01820 0.74 +0.6
365,410 + CSW01_01820 0.77 -0.1
365,426 + CSW01_01820 0.78 -0.9
365,465 - CSW01_01820 0.80 +3.3
365,466 - CSW01_01820 0.80 -0.1
365,468 + CSW01_01820 0.81 -2.1
365,479 + CSW01_01820 0.81 -2.6
365,487 - CSW01_01820 0.82 -2.5
365,502 + CSW01_01820 0.83 -2.0
365,510 - CSW01_01820 0.83 +1.6
365,510 - CSW01_01820 0.83 -0.7
365,561 - CSW01_01820 0.86 +1.1
365,607 + CSW01_01820 0.89 -2.3
365,607 + CSW01_01820 0.89 +1.4
365,615 - CSW01_01820 0.89 +1.1
365,643 + +0.4
365,675 + -3.9
365,675 + -2.3
365,676 - -1.2
365,683 - +0.9
365,683 - -0.2
365,683 - -2.9
365,685 + +1.3
365,716 - -2.8
365,752 + -0.9
365,760 - -2.2
365,760 - +2.4
365,760 - +0.2
365,762 + +0.5
365,770 - -2.9
365,770 - +0.6
365,860 + -2.7
366,015 - CSW01_01825 0.10 +0.6
366,015 - CSW01_01825 0.10 -3.2
366,026 - CSW01_01825 0.11 +0.4
366,026 - CSW01_01825 0.11 +0.7
366,026 - CSW01_01825 0.11 +0.6
366,030 + CSW01_01825 0.11 +1.5
366,077 + CSW01_01825 0.13 -3.1
366,104 + CSW01_01825 0.15 -1.7
366,104 + CSW01_01825 0.15 +0.7
366,114 + CSW01_01825 0.15 -0.6
366,114 + CSW01_01825 0.15 -0.1
366,122 - CSW01_01825 0.16 -2.0
366,125 + CSW01_01825 0.16 +1.0
366,125 + CSW01_01825 0.16 +1.1
366,133 - CSW01_01825 0.16 -0.5
366,133 - CSW01_01825 0.16 +0.2
366,138 + CSW01_01825 0.17 -2.7
366,138 + CSW01_01825 0.17 +0.4
366,138 + CSW01_01825 0.17 +0.9
366,138 + CSW01_01825 0.17 -0.8
366,138 + CSW01_01825 0.17 +1.3
366,209 + CSW01_01825 0.20 -3.2
366,235 + CSW01_01825 0.22 -0.9
366,237 - CSW01_01825 0.22 -3.2
366,355 - CSW01_01825 0.28 -1.9
366,355 - CSW01_01825 0.28 +1.0
366,357 + CSW01_01825 0.28 +1.1
366,369 + CSW01_01825 0.28 -1.7
366,369 + CSW01_01825 0.28 -0.1
366,369 + CSW01_01825 0.28 -4.1
366,369 + CSW01_01825 0.28 -2.7
366,369 + CSW01_01825 0.28 -0.7
366,369 + CSW01_01825 0.28 +1.4
366,377 - CSW01_01825 0.29 -1.1
366,377 - CSW01_01825 0.29 -2.7
366,377 - CSW01_01825 0.29 +0.2
366,409 - CSW01_01825 0.30 +0.6
366,510 + CSW01_01825 0.36 +1.3
366,510 + CSW01_01825 0.36 +1.3
366,518 - CSW01_01825 0.36 -0.9
366,518 - CSW01_01825 0.36 -0.5
366,538 + CSW01_01825 0.37 -1.5
366,566 + CSW01_01825 0.38 +0.5
366,566 + CSW01_01825 0.38 -0.3
366,574 - CSW01_01825 0.39 -1.7
366,608 - CSW01_01825 0.41 -0.7
366,696 - CSW01_01825 0.45 +1.7
366,706 + CSW01_01825 0.46 +0.2
366,729 + CSW01_01825 0.47 +0.3
366,782 + CSW01_01825 0.49 +1.8
366,782 + CSW01_01825 0.49 +1.3
366,782 + CSW01_01825 0.49 -0.9
366,782 + CSW01_01825 0.49 -4.4
366,782 + CSW01_01825 0.49 -2.7
366,782 + CSW01_01825 0.49 +1.4
366,782 + CSW01_01825 0.49 -3.2
366,790 - CSW01_01825 0.50 +0.6
366,790 - CSW01_01825 0.50 -1.5
366,790 - CSW01_01825 0.50 +0.2
366,790 - CSW01_01825 0.50 -0.5
366,790 - CSW01_01825 0.50 -3.1
366,790 - CSW01_01825 0.50 -1.2
366,790 - CSW01_01825 0.50 +0.4
366,790 - CSW01_01825 0.50 -2.8
366,790 - CSW01_01825 0.50 +2.0
366,799 + CSW01_01825 0.50 +0.7
366,799 + CSW01_01825 0.50 +0.0
366,799 + CSW01_01825 0.50 +0.5
366,799 + CSW01_01825 0.50 +0.2

Or see this region's nucleotide sequence