Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01755

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01750 and CSW01_01755 are separated by 186 nucleotidesCSW01_01755 and CSW01_01760 overlap by 8 nucleotides CSW01_01750: CSW01_01750 - transporter, at 356,138 to 357,574 _01750 CSW01_01755: CSW01_01755 - phosphatidylserine decarboxylase proenzyme, at 357,761 to 358,618 _01755 CSW01_01760: CSW01_01760 - ribosome small subunit-dependent GTPase, at 358,611 to 359,775 _01760 Position (kb) 357 358 359Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 356.776 kb on + strand, within CSW01_01750at 356.784 kb on - strand, within CSW01_01750at 356.879 kb on + strand, within CSW01_01750at 356.912 kb on - strand, within CSW01_01750at 356.918 kb on - strand, within CSW01_01750at 356.944 kb on + strand, within CSW01_01750at 356.957 kb on - strand, within CSW01_01750at 356.983 kb on - strand, within CSW01_01750at 356.998 kb on - strand, within CSW01_01750at 357.014 kb on + strand, within CSW01_01750at 357.032 kb on - strand, within CSW01_01750at 357.043 kb on + strand, within CSW01_01750at 357.060 kb on + strand, within CSW01_01750at 357.068 kb on - strand, within CSW01_01750at 357.068 kb on - strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.098 kb on - strand, within CSW01_01750at 357.105 kb on - strand, within CSW01_01750at 357.105 kb on - strand, within CSW01_01750at 357.105 kb on - strand, within CSW01_01750at 357.105 kb on - strand, within CSW01_01750at 357.105 kb on - strand, within CSW01_01750at 357.105 kb on - strand, within CSW01_01750at 357.301 kb on + strand, within CSW01_01750at 357.301 kb on + strand, within CSW01_01750at 357.301 kb on + strand, within CSW01_01750at 357.301 kb on + strand, within CSW01_01750at 357.301 kb on + strand, within CSW01_01750at 357.309 kb on - strand, within CSW01_01750at 357.309 kb on - strand, within CSW01_01750at 357.311 kb on + strand, within CSW01_01750at 357.338 kb on - strand, within CSW01_01750at 357.338 kb on - strand, within CSW01_01750at 357.348 kb on - strand, within CSW01_01750at 357.393 kb on + strand, within CSW01_01750at 357.393 kb on + strand, within CSW01_01750at 357.393 kb on + strand, within CSW01_01750at 357.401 kb on - strand, within CSW01_01750at 357.442 kb on - strandat 357.500 kb on - strandat 357.537 kb on + strandat 357.582 kb on - strandat 357.582 kb on - strandat 357.582 kb on - strandat 357.586 kb on + strandat 357.619 kb on - strandat 357.643 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.661 kb on - strandat 357.661 kb on - strandat 357.718 kb on + strandat 357.728 kb on + strandat 357.746 kb on + strandat 357.754 kb on - strandat 357.756 kb on - strandat 357.772 kb on - strandat 357.772 kb on - strandat 357.774 kb on + strandat 357.774 kb on + strandat 358.645 kb on - strandat 358.647 kb on - strandat 358.656 kb on - strandat 358.696 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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356,776 + CSW01_01750 0.44 -2.2
356,784 - CSW01_01750 0.45 +0.2
356,879 + CSW01_01750 0.52 +0.4
356,912 - CSW01_01750 0.54 +1.1
356,918 - CSW01_01750 0.54 +0.1
356,944 + CSW01_01750 0.56 +0.4
356,957 - CSW01_01750 0.57 -0.0
356,983 - CSW01_01750 0.59 +1.5
356,998 - CSW01_01750 0.60 +0.4
357,014 + CSW01_01750 0.61 +1.1
357,032 - CSW01_01750 0.62 -2.2
357,043 + CSW01_01750 0.63 -0.3
357,060 + CSW01_01750 0.64 -0.7
357,068 - CSW01_01750 0.65 +0.8
357,068 - CSW01_01750 0.65 +0.8
357,097 + CSW01_01750 0.67 -0.1
357,097 + CSW01_01750 0.67 -1.0
357,097 + CSW01_01750 0.67 -1.3
357,097 + CSW01_01750 0.67 +0.6
357,097 + CSW01_01750 0.67 -1.9
357,097 + CSW01_01750 0.67 +1.0
357,097 + CSW01_01750 0.67 +1.1
357,097 + CSW01_01750 0.67 -0.2
357,098 - CSW01_01750 0.67 -2.9
357,105 - CSW01_01750 0.67 -2.8
357,105 - CSW01_01750 0.67 +2.1
357,105 - CSW01_01750 0.67 -0.0
357,105 - CSW01_01750 0.67 -3.3
357,105 - CSW01_01750 0.67 -0.1
357,105 - CSW01_01750 0.67 +0.4
357,301 + CSW01_01750 0.81 -2.7
357,301 + CSW01_01750 0.81 -1.3
357,301 + CSW01_01750 0.81 +0.7
357,301 + CSW01_01750 0.81 +1.5
357,301 + CSW01_01750 0.81 -0.4
357,309 - CSW01_01750 0.81 +0.8
357,309 - CSW01_01750 0.81 -1.0
357,311 + CSW01_01750 0.82 +0.1
357,338 - CSW01_01750 0.84 +2.0
357,338 - CSW01_01750 0.84 -3.2
357,348 - CSW01_01750 0.84 +0.3
357,393 + CSW01_01750 0.87 +0.1
357,393 + CSW01_01750 0.87 -1.7
357,393 + CSW01_01750 0.87 -0.7
357,401 - CSW01_01750 0.88 +0.1
357,442 - -1.3
357,500 - +0.9
357,537 + -4.5
357,582 - -0.3
357,582 - +0.9
357,582 - -0.1
357,586 + -1.2
357,619 - +3.0
357,643 + -0.1
357,653 + -3.2
357,653 + +0.2
357,653 + -0.8
357,653 + -0.7
357,653 + +0.4
357,653 + -3.9
357,661 - -0.1
357,661 - +1.0
357,718 + -1.2
357,728 + +2.3
357,746 + -0.1
357,754 - +0.8
357,756 - +0.7
357,772 - -2.3
357,772 - -0.5
357,774 + +1.2
357,774 + -2.9
358,645 - -1.0
358,647 - -0.3
358,656 - -0.4
358,696 - +1.5

Or see this region's nucleotide sequence