Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01430

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01420 and CSW01_01425 are separated by 75 nucleotidesCSW01_01425 and CSW01_01430 are separated by 30 nucleotidesCSW01_01430 and CSW01_01435 are separated by 226 nucleotides CSW01_01420: CSW01_01420 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase, at 279,627 to 281,219 _01420 CSW01_01425: CSW01_01425 - phosphoribosylamine--glycine ligase, at 281,295 to 281,474 _01425 CSW01_01430: CSW01_01430 - Zn(2+)-responsive transcriptional regulator, at 281,505 to 281,906 _01430 CSW01_01435: CSW01_01435 - transcriptional regulator CadC, at 282,133 to 283,692 _01435 Position (kb) 281 282Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 280.506 kb on - strand, within CSW01_01420at 280.590 kb on + strand, within CSW01_01420at 280.592 kb on + strand, within CSW01_01420at 280.600 kb on - strand, within CSW01_01420at 280.623 kb on + strand, within CSW01_01420at 280.623 kb on + strand, within CSW01_01420at 280.631 kb on - strand, within CSW01_01420at 280.705 kb on - strand, within CSW01_01420at 280.717 kb on - strand, within CSW01_01420at 280.724 kb on - strand, within CSW01_01420at 280.725 kb on + strand, within CSW01_01420at 280.785 kb on + strand, within CSW01_01420at 280.793 kb on - strand, within CSW01_01420at 280.808 kb on - strand, within CSW01_01420at 280.855 kb on + strand, within CSW01_01420at 280.900 kb on + strand, within CSW01_01420at 280.900 kb on + strand, within CSW01_01420at 280.900 kb on + strand, within CSW01_01420at 280.900 kb on + strand, within CSW01_01420at 280.908 kb on - strand, within CSW01_01420at 280.908 kb on - strand, within CSW01_01420at 280.967 kb on + strand, within CSW01_01420at 280.977 kb on + strand, within CSW01_01420at 280.985 kb on - strand, within CSW01_01420at 280.997 kb on - strand, within CSW01_01420at 281.009 kb on + strand, within CSW01_01420at 281.019 kb on - strand, within CSW01_01420at 281.086 kb on + strandat 281.113 kb on - strandat 281.120 kb on + strandat 281.120 kb on + strandat 281.120 kb on + strandat 281.120 kb on + strandat 281.128 kb on - strandat 281.189 kb on - strandat 281.203 kb on + strandat 281.203 kb on + strandat 281.254 kb on + strandat 281.264 kb on - strandat 281.269 kb on + strandat 281.269 kb on + strandat 281.269 kb on - strandat 281.292 kb on + strandat 281.294 kb on - strandat 281.340 kb on - strand, within CSW01_01425at 281.486 kb on - strandat 281.523 kb on + strandat 281.679 kb on + strand, within CSW01_01430at 281.679 kb on + strand, within CSW01_01430at 281.686 kb on + strand, within CSW01_01430at 281.694 kb on - strand, within CSW01_01430at 281.694 kb on - strand, within CSW01_01430at 281.694 kb on - strand, within CSW01_01430at 281.694 kb on - strand, within CSW01_01430at 281.694 kb on - strand, within CSW01_01430at 281.696 kb on + strand, within CSW01_01430at 281.703 kb on - strand, within CSW01_01430at 281.733 kb on + strand, within CSW01_01430at 281.733 kb on + strand, within CSW01_01430at 281.743 kb on + strand, within CSW01_01430at 281.767 kb on + strand, within CSW01_01430at 281.767 kb on + strand, within CSW01_01430at 281.767 kb on + strand, within CSW01_01430at 281.775 kb on - strand, within CSW01_01430at 281.775 kb on - strand, within CSW01_01430at 281.775 kb on - strand, within CSW01_01430at 281.802 kb on + strand, within CSW01_01430at 281.817 kb on - strand, within CSW01_01430at 281.848 kb on + strand, within CSW01_01430at 281.848 kb on + strand, within CSW01_01430at 281.856 kb on - strand, within CSW01_01430at 282.067 kb on - strandat 282.160 kb on + strandat 282.173 kb on + strandat 282.174 kb on - strandat 282.181 kb on - strandat 282.183 kb on + strandat 282.202 kb on + strandat 282.210 kb on + strandat 282.210 kb on + strandat 282.210 kb on + strandat 282.210 kb on + strandat 282.210 kb on + strandat 282.215 kb on + strandat 282.218 kb on - strandat 282.218 kb on - strandat 282.218 kb on - strandat 282.271 kb on + strandat 282.278 kb on + strandat 282.278 kb on + strandat 282.309 kb on - strand, within CSW01_01435at 282.309 kb on - strand, within CSW01_01435at 282.357 kb on + strand, within CSW01_01435at 282.365 kb on - strand, within CSW01_01435at 282.390 kb on + strand, within CSW01_01435at 282.411 kb on + strand, within CSW01_01435at 282.411 kb on + strand, within CSW01_01435at 282.411 kb on + strand, within CSW01_01435at 282.419 kb on - strand, within CSW01_01435at 282.422 kb on + strand, within CSW01_01435at 282.537 kb on - strand, within CSW01_01435at 282.577 kb on - strand, within CSW01_01435at 282.593 kb on - strand, within CSW01_01435at 282.638 kb on + strand, within CSW01_01435at 282.638 kb on + strand, within CSW01_01435at 282.643 kb on + strand, within CSW01_01435at 282.646 kb on - strand, within CSW01_01435at 282.651 kb on - strand, within CSW01_01435at 282.667 kb on + strand, within CSW01_01435at 282.667 kb on + strand, within CSW01_01435at 282.700 kb on + strand, within CSW01_01435at 282.700 kb on + strand, within CSW01_01435at 282.715 kb on - strand, within CSW01_01435at 282.722 kb on + strand, within CSW01_01435at 282.745 kb on - strand, within CSW01_01435at 282.791 kb on + strand, within CSW01_01435at 282.791 kb on + strand, within CSW01_01435at 282.791 kb on + strand, within CSW01_01435at 282.799 kb on - strand, within CSW01_01435at 282.799 kb on - strand, within CSW01_01435at 282.799 kb on - strand, within CSW01_01435at 282.830 kb on - strand, within CSW01_01435at 282.884 kb on + strand, within CSW01_01435

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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280,506 - CSW01_01420 0.55 -0.7
280,590 + CSW01_01420 0.60 -0.1
280,592 + CSW01_01420 0.61 +1.7
280,600 - CSW01_01420 0.61 -0.0
280,623 + CSW01_01420 0.63 +1.7
280,623 + CSW01_01420 0.63 +1.3
280,631 - CSW01_01420 0.63 +1.1
280,705 - CSW01_01420 0.68 +3.1
280,717 - CSW01_01420 0.68 +1.3
280,724 - CSW01_01420 0.69 +1.9
280,725 + CSW01_01420 0.69 -0.1
280,785 + CSW01_01420 0.73 +1.3
280,793 - CSW01_01420 0.73 +0.3
280,808 - CSW01_01420 0.74 +0.1
280,855 + CSW01_01420 0.77 +1.9
280,900 + CSW01_01420 0.80 +0.9
280,900 + CSW01_01420 0.80 -0.2
280,900 + CSW01_01420 0.80 +2.2
280,900 + CSW01_01420 0.80 +1.6
280,908 - CSW01_01420 0.80 +1.1
280,908 - CSW01_01420 0.80 +0.7
280,967 + CSW01_01420 0.84 +0.6
280,977 + CSW01_01420 0.85 +0.3
280,985 - CSW01_01420 0.85 -0.5
280,997 - CSW01_01420 0.86 +1.8
281,009 + CSW01_01420 0.87 +0.3
281,019 - CSW01_01420 0.87 +1.0
281,086 + -1.7
281,113 - +0.1
281,120 + -2.0
281,120 + +1.5
281,120 + +1.3
281,120 + -1.3
281,128 - +1.4
281,189 - -2.6
281,203 + +1.9
281,203 + +0.7
281,254 + -2.4
281,264 - -1.5
281,269 + -0.0
281,269 + +1.4
281,269 - -1.9
281,292 + +0.4
281,294 - -1.5
281,340 - CSW01_01425 0.25 +0.6
281,486 - +1.8
281,523 + +0.2
281,679 + CSW01_01430 0.43 +0.6
281,679 + CSW01_01430 0.43 -2.4
281,686 + CSW01_01430 0.45 +0.1
281,694 - CSW01_01430 0.47 -0.4
281,694 - CSW01_01430 0.47 +0.6
281,694 - CSW01_01430 0.47 -3.4
281,694 - CSW01_01430 0.47 +0.5
281,694 - CSW01_01430 0.47 +0.3
281,696 + CSW01_01430 0.48 +1.1
281,703 - CSW01_01430 0.49 +0.3
281,733 + CSW01_01430 0.57 +1.6
281,733 + CSW01_01430 0.57 +1.4
281,743 + CSW01_01430 0.59 -0.4
281,767 + CSW01_01430 0.65 +0.3
281,767 + CSW01_01430 0.65 +1.3
281,767 + CSW01_01430 0.65 -3.6
281,775 - CSW01_01430 0.67 -2.4
281,775 - CSW01_01430 0.67 +2.0
281,775 - CSW01_01430 0.67 -2.7
281,802 + CSW01_01430 0.74 +1.7
281,817 - CSW01_01430 0.78 +0.4
281,848 + CSW01_01430 0.85 -1.4
281,848 + CSW01_01430 0.85 +0.5
281,856 - CSW01_01430 0.87 -2.8
282,067 - +0.2
282,160 + -0.7
282,173 + -0.2
282,174 - +0.3
282,181 - +0.2
282,183 + +1.8
282,202 + +1.0
282,210 + +0.6
282,210 + +0.4
282,210 + +0.1
282,210 + +0.4
282,210 + -2.2
282,215 + +1.0
282,218 - +1.8
282,218 - -0.4
282,218 - +0.7
282,271 + -3.2
282,278 + -1.4
282,278 + +0.0
282,309 - CSW01_01435 0.11 +0.1
282,309 - CSW01_01435 0.11 -2.7
282,357 + CSW01_01435 0.14 +0.5
282,365 - CSW01_01435 0.15 +0.4
282,390 + CSW01_01435 0.16 -3.2
282,411 + CSW01_01435 0.18 -3.9
282,411 + CSW01_01435 0.18 -3.8
282,411 + CSW01_01435 0.18 +0.0
282,419 - CSW01_01435 0.18 -1.6
282,422 + CSW01_01435 0.19 -1.2
282,537 - CSW01_01435 0.26 -0.0
282,577 - CSW01_01435 0.28 +0.6
282,593 - CSW01_01435 0.29 +0.5
282,638 + CSW01_01435 0.32 +1.6
282,638 + CSW01_01435 0.32 -0.1
282,643 + CSW01_01435 0.33 +0.2
282,646 - CSW01_01435 0.33 -0.0
282,651 - CSW01_01435 0.33 +0.6
282,667 + CSW01_01435 0.34 +1.5
282,667 + CSW01_01435 0.34 -0.1
282,700 + CSW01_01435 0.36 -1.9
282,700 + CSW01_01435 0.36 +0.4
282,715 - CSW01_01435 0.37 +0.6
282,722 + CSW01_01435 0.38 +1.0
282,745 - CSW01_01435 0.39 +0.7
282,791 + CSW01_01435 0.42 +0.5
282,791 + CSW01_01435 0.42 -2.9
282,791 + CSW01_01435 0.42 -0.5
282,799 - CSW01_01435 0.43 -1.6
282,799 - CSW01_01435 0.43 +0.4
282,799 - CSW01_01435 0.43 +0.8
282,830 - CSW01_01435 0.45 +0.6
282,884 + CSW01_01435 0.48 +0.4

Or see this region's nucleotide sequence