Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01050

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01045 and CSW01_01050 overlap by 8 nucleotidesCSW01_01050 and CSW01_01055 are separated by 155 nucleotidesCSW01_01055 and CSW01_01060 are separated by 35 nucleotides CSW01_01045: CSW01_01045 - DNA helicase RecQ, at 201,831 to 203,666 _01045 CSW01_01050: CSW01_01050 - DUF3630 domain-containing protein, at 203,659 to 203,958 _01050 CSW01_01055: CSW01_01055 - hypothetical protein, at 204,114 to 204,491 _01055 CSW01_01060: CSW01_01060 - ABC transporter ATP-binding protein, at 204,527 to 206,362 _01060 Position (kb) 203 204Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 202.663 kb on + strand, within CSW01_01045at 202.686 kb on - strand, within CSW01_01045at 202.752 kb on - strand, within CSW01_01045at 202.786 kb on + strand, within CSW01_01045at 202.821 kb on + strand, within CSW01_01045at 202.829 kb on - strand, within CSW01_01045at 202.831 kb on - strand, within CSW01_01045at 202.854 kb on - strand, within CSW01_01045at 202.856 kb on + strand, within CSW01_01045at 202.864 kb on - strand, within CSW01_01045at 202.885 kb on + strand, within CSW01_01045at 202.904 kb on + strand, within CSW01_01045at 202.912 kb on - strand, within CSW01_01045at 202.912 kb on - strand, within CSW01_01045at 203.024 kb on + strand, within CSW01_01045at 203.057 kb on + strand, within CSW01_01045at 203.082 kb on - strand, within CSW01_01045at 203.102 kb on - strand, within CSW01_01045at 203.145 kb on + strand, within CSW01_01045at 203.159 kb on - strand, within CSW01_01045at 203.161 kb on - strand, within CSW01_01045at 203.209 kb on + strand, within CSW01_01045at 203.285 kb on - strand, within CSW01_01045at 203.285 kb on - strand, within CSW01_01045at 203.308 kb on - strand, within CSW01_01045at 203.345 kb on - strand, within CSW01_01045at 203.379 kb on + strand, within CSW01_01045at 203.459 kb on + strand, within CSW01_01045at 203.476 kb on - strand, within CSW01_01045at 203.493 kb on + strandat 203.534 kb on - strandat 203.558 kb on - strandat 203.582 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.590 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.667 kb on + strandat 203.758 kb on + strand, within CSW01_01050at 203.804 kb on + strand, within CSW01_01050at 203.809 kb on + strand, within CSW01_01050at 203.809 kb on + strand, within CSW01_01050at 203.809 kb on + strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.819 kb on - strand, within CSW01_01050at 203.819 kb on - strand, within CSW01_01050at 203.894 kb on + strand, within CSW01_01050at 203.900 kb on + strand, within CSW01_01050at 203.900 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.913 kb on - strand, within CSW01_01050at 203.913 kb on - strand, within CSW01_01050at 203.952 kb on + strandat 203.973 kb on + strandat 203.976 kb on - strandat 203.976 kb on - strandat 204.001 kb on - strandat 204.033 kb on + strandat 204.041 kb on + strandat 204.041 kb on - strandat 204.041 kb on - strandat 204.081 kb on + strandat 204.087 kb on - strandat 204.104 kb on + strandat 204.132 kb on + strandat 204.216 kb on + strand, within CSW01_01055at 204.228 kb on + strand, within CSW01_01055at 204.233 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.298 kb on - strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.334 kb on - strand, within CSW01_01055at 204.360 kb on + strand, within CSW01_01055at 204.360 kb on + strand, within CSW01_01055at 204.368 kb on - strand, within CSW01_01055at 204.368 kb on - strand, within CSW01_01055at 204.381 kb on + strand, within CSW01_01055at 204.447 kb on - strand, within CSW01_01055at 204.463 kb on - strandat 204.472 kb on + strandat 204.507 kb on + strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.559 kb on - strandat 204.561 kb on + strandat 204.569 kb on - strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.607 kb on - strandat 204.748 kb on + strand, within CSW01_01060at 204.778 kb on - strand, within CSW01_01060at 204.788 kb on - strand, within CSW01_01060at 204.790 kb on - strand, within CSW01_01060at 204.827 kb on + strand, within CSW01_01060at 204.827 kb on + strand, within CSW01_01060at 204.827 kb on + strand, within CSW01_01060at 204.828 kb on - strand, within CSW01_01060at 204.835 kb on - strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.858 kb on - strand, within CSW01_01060at 204.858 kb on - strand, within CSW01_01060at 204.858 kb on - strand, within CSW01_01060at 204.877 kb on + strand, within CSW01_01060at 204.878 kb on + strand, within CSW01_01060at 204.878 kb on + strand, within CSW01_01060at 204.878 kb on + strand, within CSW01_01060at 204.886 kb on - strand, within CSW01_01060at 204.886 kb on - strand, within CSW01_01060at 204.886 kb on - strand, within CSW01_01060at 204.893 kb on + strand, within CSW01_01060at 204.901 kb on - strand, within CSW01_01060at 204.935 kb on + strand, within CSW01_01060

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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202,663 + CSW01_01045 0.45 +0.4
202,686 - CSW01_01045 0.47 -3.7
202,752 - CSW01_01045 0.50 +0.9
202,786 + CSW01_01045 0.52 -0.9
202,821 + CSW01_01045 0.54 -3.7
202,829 - CSW01_01045 0.54 +1.5
202,831 - CSW01_01045 0.54 +0.3
202,854 - CSW01_01045 0.56 +1.1
202,856 + CSW01_01045 0.56 +0.1
202,864 - CSW01_01045 0.56 -2.6
202,885 + CSW01_01045 0.57 +1.5
202,904 + CSW01_01045 0.58 +0.8
202,912 - CSW01_01045 0.59 +1.1
202,912 - CSW01_01045 0.59 -0.1
203,024 + CSW01_01045 0.65 +0.2
203,057 + CSW01_01045 0.67 +1.2
203,082 - CSW01_01045 0.68 -0.5
203,102 - CSW01_01045 0.69 -0.3
203,145 + CSW01_01045 0.72 +1.5
203,159 - CSW01_01045 0.72 -3.0
203,161 - CSW01_01045 0.72 -1.7
203,209 + CSW01_01045 0.75 +1.0
203,285 - CSW01_01045 0.79 +0.4
203,285 - CSW01_01045 0.79 +0.9
203,308 - CSW01_01045 0.80 +0.2
203,345 - CSW01_01045 0.82 +2.3
203,379 + CSW01_01045 0.84 +0.6
203,459 + CSW01_01045 0.89 -2.6
203,476 - CSW01_01045 0.90 +0.2
203,493 + +1.3
203,534 - +0.8
203,558 - +2.7
203,582 + +1.4
203,587 + -2.0
203,587 + -3.4
203,587 + +2.6
203,587 + +1.5
203,587 + +0.0
203,587 + -3.3
203,587 + -2.1
203,587 + -0.8
203,590 - +1.9
203,595 - +1.8
203,595 - +0.9
203,595 - +1.3
203,595 - +1.4
203,595 - +1.3
203,667 + +1.0
203,758 + CSW01_01050 0.33 +0.1
203,804 + CSW01_01050 0.48 +1.7
203,809 + CSW01_01050 0.50 +0.5
203,809 + CSW01_01050 0.50 +0.3
203,809 + CSW01_01050 0.50 -0.5
203,817 - CSW01_01050 0.53 +0.9
203,817 - CSW01_01050 0.53 -0.3
203,817 - CSW01_01050 0.53 -0.6
203,817 - CSW01_01050 0.53 +0.0
203,817 - CSW01_01050 0.53 +1.5
203,817 - CSW01_01050 0.53 +0.7
203,819 - CSW01_01050 0.53 -3.4
203,819 - CSW01_01050 0.53 +0.4
203,894 + CSW01_01050 0.78 +0.9
203,900 + CSW01_01050 0.80 +0.4
203,900 + CSW01_01050 0.80 -2.1
203,905 + CSW01_01050 0.82 +0.6
203,905 + CSW01_01050 0.82 +0.5
203,905 + CSW01_01050 0.82 +1.4
203,905 + CSW01_01050 0.82 +0.3
203,905 + CSW01_01050 0.82 -0.8
203,913 - CSW01_01050 0.85 +1.4
203,913 - CSW01_01050 0.85 -3.2
203,952 + +1.6
203,973 + -3.5
203,976 - +0.1
203,976 - -0.1
204,001 - -3.5
204,033 + +1.2
204,041 + -3.0
204,041 - -2.7
204,041 - -2.5
204,081 + -1.4
204,087 - -0.5
204,104 + +1.0
204,132 + +0.8
204,216 + CSW01_01055 0.27 -0.4
204,228 + CSW01_01055 0.30 +0.7
204,233 + CSW01_01055 0.31 -3.6
204,279 + CSW01_01055 0.44 -2.6
204,279 + CSW01_01055 0.44 +0.7
204,279 + CSW01_01055 0.44 +1.6
204,279 + CSW01_01055 0.44 -2.5
204,298 - CSW01_01055 0.49 -0.4
204,316 + CSW01_01055 0.53 +1.0
204,316 + CSW01_01055 0.53 -1.3
204,316 + CSW01_01055 0.53 -4.8
204,316 + CSW01_01055 0.53 +1.0
204,316 + CSW01_01055 0.53 -2.3
204,316 + CSW01_01055 0.53 +1.3
204,316 + CSW01_01055 0.53 -0.1
204,316 + CSW01_01055 0.53 +0.3
204,316 + CSW01_01055 0.53 +1.4
204,316 + CSW01_01055 0.53 -2.5
204,316 + CSW01_01055 0.53 +0.2
204,316 + CSW01_01055 0.53 -4.0
204,324 - CSW01_01055 0.56 -0.8
204,324 - CSW01_01055 0.56 -0.5
204,324 - CSW01_01055 0.56 -2.2
204,324 - CSW01_01055 0.56 -0.3
204,324 - CSW01_01055 0.56 +1.4
204,324 - CSW01_01055 0.56 -0.3
204,324 - CSW01_01055 0.56 -1.4
204,324 - CSW01_01055 0.56 +1.2
204,324 - CSW01_01055 0.56 -3.4
204,324 - CSW01_01055 0.56 +2.4
204,324 - CSW01_01055 0.56 -0.2
204,326 + CSW01_01055 0.56 +1.2
204,326 + CSW01_01055 0.56 -1.3
204,326 + CSW01_01055 0.56 -4.1
204,326 + CSW01_01055 0.56 +0.5
204,334 - CSW01_01055 0.58 +1.3
204,360 + CSW01_01055 0.65 +1.1
204,360 + CSW01_01055 0.65 +0.6
204,368 - CSW01_01055 0.67 +1.1
204,368 - CSW01_01055 0.67 -2.4
204,381 + CSW01_01055 0.71 +1.9
204,447 - CSW01_01055 0.88 +0.9
204,463 - -1.0
204,472 + +2.0
204,507 + +0.5
204,515 - -0.2
204,515 - -0.1
204,515 - -1.3
204,515 - +1.0
204,515 - +1.9
204,559 - -2.0
204,561 + +0.3
204,569 - +1.9
204,599 + +1.0
204,599 + +2.1
204,599 + -0.5
204,599 + -0.7
204,599 + -0.8
204,607 - +1.1
204,748 + CSW01_01060 0.12 -1.3
204,778 - CSW01_01060 0.14 +0.0
204,788 - CSW01_01060 0.14 -2.3
204,790 - CSW01_01060 0.14 -1.3
204,827 + CSW01_01060 0.16 +0.7
204,827 + CSW01_01060 0.16 +1.2
204,827 + CSW01_01060 0.16 -1.7
204,828 - CSW01_01060 0.16 -1.2
204,835 - CSW01_01060 0.17 +3.5
204,850 + CSW01_01060 0.18 -0.0
204,850 + CSW01_01060 0.18 +1.2
204,850 + CSW01_01060 0.18 -0.5
204,850 + CSW01_01060 0.18 -3.5
204,850 + CSW01_01060 0.18 -2.3
204,858 - CSW01_01060 0.18 -1.2
204,858 - CSW01_01060 0.18 -1.4
204,858 - CSW01_01060 0.18 -2.8
204,877 + CSW01_01060 0.19 +0.7
204,878 + CSW01_01060 0.19 -1.1
204,878 + CSW01_01060 0.19 -0.0
204,878 + CSW01_01060 0.19 +0.6
204,886 - CSW01_01060 0.20 -1.5
204,886 - CSW01_01060 0.20 -2.5
204,886 - CSW01_01060 0.20 -2.0
204,893 + CSW01_01060 0.20 +0.0
204,901 - CSW01_01060 0.20 -2.7
204,935 + CSW01_01060 0.22 -3.0

Or see this region's nucleotide sequence