Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00650

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00640 and CSW01_00645 are separated by 13 nucleotidesCSW01_00645 and CSW01_00650 overlap by 32 nucleotidesCSW01_00650 and CSW01_00655 are separated by 2 nucleotidesCSW01_00655 and CSW01_00660 are separated by 109 nucleotides CSW01_00640: CSW01_00640 - diaminopimelate epimerase, at 120,495 to 121,325 _00640 CSW01_00645: CSW01_00645 - DUF484 domain-containing protein, at 121,339 to 122,037 _00645 CSW01_00650: CSW01_00650 - tyrosine recombinase XerC, at 122,006 to 122,941 _00650 CSW01_00655: CSW01_00655 - 2-haloalkanoic acid dehalogenase, at 122,944 to 123,663 _00655 CSW01_00660: CSW01_00660 - sensor domain-containing phosphodiesterase, at 123,773 to 126,262 _00660 Position (kb) 122 123Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 121.316 kb on - strandat 121.377 kb on - strandat 121.377 kb on - strandat 121.429 kb on - strand, within CSW01_00645at 121.429 kb on - strand, within CSW01_00645at 121.438 kb on + strand, within CSW01_00645at 121.438 kb on + strand, within CSW01_00645at 121.446 kb on - strand, within CSW01_00645at 121.461 kb on - strand, within CSW01_00645at 121.478 kb on + strand, within CSW01_00645at 121.478 kb on + strand, within CSW01_00645at 121.480 kb on + strand, within CSW01_00645at 121.480 kb on + strand, within CSW01_00645at 121.480 kb on + strand, within CSW01_00645at 121.517 kb on - strand, within CSW01_00645at 121.581 kb on + strand, within CSW01_00645at 121.648 kb on + strand, within CSW01_00645at 121.728 kb on + strand, within CSW01_00645at 121.826 kb on - strand, within CSW01_00645at 121.851 kb on + strand, within CSW01_00645at 121.859 kb on - strand, within CSW01_00645at 121.859 kb on - strand, within CSW01_00645at 121.859 kb on - strand, within CSW01_00645at 121.962 kb on + strand, within CSW01_00645at 121.962 kb on + strand, within CSW01_00645at 121.970 kb on - strandat 121.971 kb on - strandat 121.998 kb on - strandat 122.099 kb on - strandat 122.108 kb on - strand, within CSW01_00650at 122.108 kb on - strand, within CSW01_00650at 122.115 kb on + strand, within CSW01_00650at 122.123 kb on - strand, within CSW01_00650at 122.128 kb on + strand, within CSW01_00650at 122.128 kb on + strand, within CSW01_00650at 122.136 kb on + strand, within CSW01_00650at 122.141 kb on + strand, within CSW01_00650at 122.141 kb on + strand, within CSW01_00650at 122.148 kb on + strand, within CSW01_00650at 122.153 kb on + strand, within CSW01_00650at 122.166 kb on - strand, within CSW01_00650at 122.308 kb on + strand, within CSW01_00650at 122.309 kb on + strand, within CSW01_00650at 122.314 kb on + strand, within CSW01_00650at 122.314 kb on + strand, within CSW01_00650at 122.314 kb on + strand, within CSW01_00650at 122.322 kb on - strand, within CSW01_00650at 122.322 kb on - strand, within CSW01_00650at 122.322 kb on - strand, within CSW01_00650at 122.334 kb on + strand, within CSW01_00650at 122.395 kb on + strand, within CSW01_00650at 122.455 kb on + strand, within CSW01_00650at 122.467 kb on + strand, within CSW01_00650at 122.468 kb on + strand, within CSW01_00650at 122.533 kb on - strand, within CSW01_00650at 122.533 kb on - strand, within CSW01_00650at 122.533 kb on - strand, within CSW01_00650at 122.584 kb on + strand, within CSW01_00650at 122.585 kb on + strand, within CSW01_00650at 122.585 kb on + strand, within CSW01_00650at 122.585 kb on + strand, within CSW01_00650at 122.593 kb on - strand, within CSW01_00650at 122.804 kb on - strand, within CSW01_00650at 122.821 kb on - strand, within CSW01_00650at 122.821 kb on - strand, within CSW01_00650at 122.821 kb on - strand, within CSW01_00650at 122.833 kb on + strand, within CSW01_00650at 122.890 kb on + strandat 122.891 kb on + strandat 122.891 kb on + strandat 122.899 kb on - strandat 122.926 kb on + strandat 122.926 kb on + strandat 122.926 kb on + strandat 122.977 kb on + strandat 123.010 kb on - strandat 123.015 kb on + strandat 123.022 kb on - strand, within CSW01_00655at 123.057 kb on + strand, within CSW01_00655at 123.074 kb on + strand, within CSW01_00655at 123.117 kb on + strand, within CSW01_00655at 123.125 kb on - strand, within CSW01_00655at 123.142 kb on + strand, within CSW01_00655at 123.145 kb on - strand, within CSW01_00655at 123.145 kb on - strand, within CSW01_00655at 123.149 kb on + strand, within CSW01_00655at 123.150 kb on - strand, within CSW01_00655at 123.150 kb on - strand, within CSW01_00655at 123.157 kb on - strand, within CSW01_00655at 123.157 kb on - strand, within CSW01_00655at 123.173 kb on + strand, within CSW01_00655at 123.181 kb on - strand, within CSW01_00655at 123.199 kb on + strand, within CSW01_00655at 123.216 kb on + strand, within CSW01_00655at 123.253 kb on - strand, within CSW01_00655at 123.266 kb on + strand, within CSW01_00655at 123.274 kb on - strand, within CSW01_00655at 123.400 kb on + strand, within CSW01_00655at 123.400 kb on + strand, within CSW01_00655at 123.408 kb on - strand, within CSW01_00655at 123.408 kb on - strand, within CSW01_00655at 123.412 kb on + strand, within CSW01_00655at 123.412 kb on + strand, within CSW01_00655at 123.420 kb on - strand, within CSW01_00655at 123.432 kb on + strand, within CSW01_00655at 123.433 kb on - strand, within CSW01_00655at 123.435 kb on - strand, within CSW01_00655at 123.458 kb on + strand, within CSW01_00655at 123.458 kb on + strand, within CSW01_00655at 123.458 kb on + strand, within CSW01_00655at 123.460 kb on + strand, within CSW01_00655at 123.476 kb on - strand, within CSW01_00655at 123.493 kb on - strand, within CSW01_00655at 123.615 kb on - strandat 123.622 kb on + strandat 123.806 kb on + strandat 123.878 kb on + strandat 123.878 kb on + strandat 123.878 kb on + strandat 123.878 kb on + strandat 123.886 kb on - strandat 123.886 kb on - strandat 123.886 kb on - strandat 123.904 kb on - strandat 123.911 kb on - strandat 123.913 kb on + strandat 123.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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121,316 - -0.4
121,377 - +0.6
121,377 - -2.7
121,429 - CSW01_00645 0.13 -0.9
121,429 - CSW01_00645 0.13 +1.9
121,438 + CSW01_00645 0.14 -0.4
121,438 + CSW01_00645 0.14 +0.4
121,446 - CSW01_00645 0.15 +0.4
121,461 - CSW01_00645 0.17 -1.1
121,478 + CSW01_00645 0.20 +0.6
121,478 + CSW01_00645 0.20 -0.5
121,480 + CSW01_00645 0.20 +0.0
121,480 + CSW01_00645 0.20 -1.7
121,480 + CSW01_00645 0.20 +0.4
121,517 - CSW01_00645 0.25 +0.8
121,581 + CSW01_00645 0.35 +1.7
121,648 + CSW01_00645 0.44 +1.3
121,728 + CSW01_00645 0.56 -0.1
121,826 - CSW01_00645 0.70 -0.6
121,851 + CSW01_00645 0.73 -3.0
121,859 - CSW01_00645 0.74 -0.4
121,859 - CSW01_00645 0.74 -3.3
121,859 - CSW01_00645 0.74 +0.8
121,962 + CSW01_00645 0.89 -2.0
121,962 + CSW01_00645 0.89 -1.0
121,970 - -1.7
121,971 - -5.2
121,998 - -2.7
122,099 - -2.1
122,108 - CSW01_00650 0.11 -1.2
122,108 - CSW01_00650 0.11 +0.3
122,115 + CSW01_00650 0.12 -0.1
122,123 - CSW01_00650 0.12 -4.1
122,128 + CSW01_00650 0.13 -0.8
122,128 + CSW01_00650 0.13 -2.7
122,136 + CSW01_00650 0.14 -0.2
122,141 + CSW01_00650 0.14 -0.7
122,141 + CSW01_00650 0.14 -0.7
122,148 + CSW01_00650 0.15 -1.7
122,153 + CSW01_00650 0.16 +0.6
122,166 - CSW01_00650 0.17 +0.1
122,308 + CSW01_00650 0.32 -0.3
122,309 + CSW01_00650 0.32 -0.1
122,314 + CSW01_00650 0.33 -1.5
122,314 + CSW01_00650 0.33 -2.6
122,314 + CSW01_00650 0.33 -2.1
122,322 - CSW01_00650 0.34 -1.5
122,322 - CSW01_00650 0.34 -1.9
122,322 - CSW01_00650 0.34 -0.6
122,334 + CSW01_00650 0.35 +0.8
122,395 + CSW01_00650 0.42 +0.6
122,455 + CSW01_00650 0.48 -3.5
122,467 + CSW01_00650 0.49 -0.6
122,468 + CSW01_00650 0.49 -3.5
122,533 - CSW01_00650 0.56 -1.7
122,533 - CSW01_00650 0.56 -1.2
122,533 - CSW01_00650 0.56 -1.3
122,584 + CSW01_00650 0.62 -0.7
122,585 + CSW01_00650 0.62 -4.9
122,585 + CSW01_00650 0.62 -2.9
122,585 + CSW01_00650 0.62 -2.3
122,593 - CSW01_00650 0.63 +1.9
122,804 - CSW01_00650 0.85 -3.0
122,821 - CSW01_00650 0.87 -0.4
122,821 - CSW01_00650 0.87 +0.6
122,821 - CSW01_00650 0.87 +1.8
122,833 + CSW01_00650 0.88 -1.1
122,890 + +0.2
122,891 + -0.1
122,891 + -1.0
122,899 - +0.5
122,926 + +1.2
122,926 + -3.3
122,926 + -0.8
122,977 + -0.4
123,010 - -4.1
123,015 + -0.1
123,022 - CSW01_00655 0.11 -1.1
123,057 + CSW01_00655 0.16 +0.7
123,074 + CSW01_00655 0.18 -2.4
123,117 + CSW01_00655 0.24 -2.0
123,125 - CSW01_00655 0.25 -2.1
123,142 + CSW01_00655 0.28 -1.5
123,145 - CSW01_00655 0.28 -5.3
123,145 - CSW01_00655 0.28 +0.1
123,149 + CSW01_00655 0.28 -1.2
123,150 - CSW01_00655 0.29 +0.2
123,150 - CSW01_00655 0.29 +2.3
123,157 - CSW01_00655 0.30 +0.7
123,157 - CSW01_00655 0.30 +0.1
123,173 + CSW01_00655 0.32 +0.6
123,181 - CSW01_00655 0.33 -1.2
123,199 + CSW01_00655 0.35 +0.5
123,216 + CSW01_00655 0.38 -0.1
123,253 - CSW01_00655 0.43 -0.4
123,266 + CSW01_00655 0.45 +1.3
123,274 - CSW01_00655 0.46 +0.8
123,400 + CSW01_00655 0.63 -2.5
123,400 + CSW01_00655 0.63 +0.4
123,408 - CSW01_00655 0.64 -0.7
123,408 - CSW01_00655 0.64 -1.4
123,412 + CSW01_00655 0.65 -1.8
123,412 + CSW01_00655 0.65 -3.1
123,420 - CSW01_00655 0.66 +0.6
123,432 + CSW01_00655 0.68 -0.5
123,433 - CSW01_00655 0.68 -3.7
123,435 - CSW01_00655 0.68 -2.9
123,458 + CSW01_00655 0.71 -1.6
123,458 + CSW01_00655 0.71 -0.7
123,458 + CSW01_00655 0.71 -1.1
123,460 + CSW01_00655 0.72 -0.3
123,476 - CSW01_00655 0.74 -2.4
123,493 - CSW01_00655 0.76 -0.5
123,615 - -2.5
123,622 + -2.4
123,806 + -2.0
123,878 + +0.2
123,878 + +0.8
123,878 + +0.5
123,878 + +0.1
123,886 - -0.4
123,886 - -0.6
123,886 - -0.9
123,904 - +0.9
123,911 - +0.5
123,913 + +0.5
123,932 + -2.1

Or see this region's nucleotide sequence