Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00615

Experiment: ICP1_phage_0.23_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_00610 and CSW01_00615 are separated by 176 nucleotidesCSW01_00615 and CSW01_00620 are separated by 15 nucleotides CSW01_00610: CSW01_00610 - hydroxymethylbilane synthase, at 114,762 to 115,715 _00610 CSW01_00615: CSW01_00615 - hypothetical protein, at 115,892 to 116,038 _00615 CSW01_00620: CSW01_00620 - class I adenylate cyclase, at 116,054 to 118,585 _00620 Position (kb) 115 116 117Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 115.712 kb on - strandat 115.794 kb on + strandat 115.897 kb on - strandat 115.935 kb on + strand, within CSW01_00615at 115.943 kb on - strand, within CSW01_00615at 116.059 kb on + strandat 116.067 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
remove
115,712 - -4.1
115,794 + +0.4
115,897 - +1.1
115,935 + CSW01_00615 0.29 -2.8
115,943 - CSW01_00615 0.35 -1.3
116,059 + +2.5
116,067 - +1.6

Or see this region's nucleotide sequence