Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00555 and CSW01_00560 are separated by 708 nucleotides CSW01_00560 and CSW01_00565 are separated by 746 nucleotides
CSW01_00555: CSW01_00555 - N-acetyltransferase, at 101,959 to 102,390
_00555
CSW01_00560: CSW01_00560 - DNA polymerase I, at 103,099 to 105,903
_00560
CSW01_00565: CSW01_00565 - GTP-binding protein, at 106,650 to 107,312
_00565
Position (kb) 103
104
105
106 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 102.178 kb on - strand, within CSW01_00555 at 102.192 kb on - strand, within CSW01_00555 at 102.202 kb on + strand, within CSW01_00555 at 102.205 kb on - strand, within CSW01_00555 at 102.205 kb on - strand, within CSW01_00555 at 102.215 kb on - strand, within CSW01_00555 at 102.249 kb on - strand, within CSW01_00555 at 102.261 kb on - strand, within CSW01_00555 at 102.290 kb on - strand, within CSW01_00555 at 102.292 kb on + strand, within CSW01_00555 at 102.300 kb on - strand, within CSW01_00555 at 102.470 kb on + strand at 102.470 kb on + strand at 102.500 kb on - strand at 102.572 kb on - strand at 102.578 kb on + strand at 102.704 kb on + strand at 102.719 kb on + strand at 102.727 kb on - strand at 102.727 kb on - strand at 102.727 kb on - strand at 102.757 kb on - strand at 102.786 kb on - strand at 102.797 kb on - strand at 102.976 kb on + strand at 102.978 kb on + strand at 103.079 kb on - strand at 104.055 kb on - strand, within CSW01_00560 at 104.072 kb on + strand, within CSW01_00560 at 104.100 kb on + strand, within CSW01_00560 at 104.100 kb on + strand, within CSW01_00560 at 104.344 kb on + strand, within CSW01_00560 at 104.447 kb on + strand, within CSW01_00560 at 104.455 kb on + strand, within CSW01_00560 at 104.455 kb on + strand, within CSW01_00560 at 104.492 kb on + strand, within CSW01_00560 at 104.500 kb on - strand, within CSW01_00560 at 104.550 kb on + strand, within CSW01_00560 at 104.821 kb on + strand, within CSW01_00560 at 105.000 kb on + strand, within CSW01_00560 at 105.307 kb on + strand, within CSW01_00560 at 105.544 kb on + strand, within CSW01_00560 at 105.544 kb on + strand, within CSW01_00560 at 105.655 kb on + strand at 105.724 kb on + strand at 105.724 kb on + strand at 105.860 kb on - strand at 105.892 kb on - strand at 105.932 kb on + strand at 106.067 kb on + strand at 106.082 kb on + strand at 106.082 kb on + strand at 106.090 kb on - strand at 106.114 kb on - strand at 106.228 kb on - strand at 106.386 kb on + strand at 106.400 kb on + strand at 106.400 kb on + strand at 106.409 kb on - strand at 106.418 kb on - strand at 106.418 kb on - strand at 106.473 kb on + strand at 106.478 kb on + strand at 106.569 kb on + strand at 106.569 kb on + strand at 106.569 kb on + strand at 106.572 kb on - strand at 106.577 kb on - strand at 106.587 kb on + strand at 106.641 kb on + strand at 106.666 kb on + strand at 106.710 kb on + strand at 106.715 kb on + strand at 106.725 kb on - strand, within CSW01_00565
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 102,178 - CSW01_00555 0.51 -2.9 102,192 - CSW01_00555 0.54 -1.2 102,202 + CSW01_00555 0.56 +1.2 102,205 - CSW01_00555 0.57 +1.4 102,205 - CSW01_00555 0.57 -1.2 102,215 - CSW01_00555 0.59 -0.2 102,249 - CSW01_00555 0.67 +0.6 102,261 - CSW01_00555 0.70 -0.4 102,290 - CSW01_00555 0.77 -1.3 102,292 + CSW01_00555 0.77 +0.9 102,300 - CSW01_00555 0.79 +0.9 102,470 + -2.1 102,470 + +1.7 102,500 - -0.4 102,572 - -3.6 102,578 + +0.6 102,704 + -0.1 102,719 + -0.4 102,727 - +1.5 102,727 - +0.3 102,727 - +0.7 102,757 - +0.7 102,786 - +1.1 102,797 - -0.6 102,976 + -3.0 102,978 + -0.8 103,079 - -1.5 104,055 - CSW01_00560 0.34 -2.0 104,072 + CSW01_00560 0.35 -2.0 104,100 + CSW01_00560 0.36 -1.2 104,100 + CSW01_00560 0.36 -2.8 104,344 + CSW01_00560 0.44 -2.3 104,447 + CSW01_00560 0.48 -2.9 104,455 + CSW01_00560 0.48 -3.1 104,455 + CSW01_00560 0.48 -4.2 104,492 + CSW01_00560 0.50 +0.8 104,500 - CSW01_00560 0.50 -1.4 104,550 + CSW01_00560 0.52 -1.4 104,821 + CSW01_00560 0.61 -2.8 105,000 + CSW01_00560 0.68 -0.7 105,307 + CSW01_00560 0.79 -1.4 105,544 + CSW01_00560 0.87 -1.4 105,544 + CSW01_00560 0.87 -1.4 105,655 + -4.1 105,724 + -2.5 105,724 + -3.2 105,860 - -2.4 105,892 - +0.5 105,932 + -0.7 106,067 + -2.5 106,082 + -1.5 106,082 + -2.3 106,090 - +0.5 106,114 - +0.4 106,228 - +2.8 106,386 + -0.4 106,400 + +0.8 106,400 + +0.1 106,409 - +0.4 106,418 - +0.9 106,418 - +1.9 106,473 + -0.6 106,478 + +0.8 106,569 + +1.9 106,569 + -1.1 106,569 + -1.0 106,572 - -0.6 106,577 - +1.2 106,587 + -1.2 106,641 + +1.4 106,666 + -0.1 106,710 + +1.5 106,715 + -2.2 106,725 - CSW01_00565 0.11 +1.8
Or see this region's nucleotide sequence