Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00535 and CSW01_00540 are separated by 80 nucleotides CSW01_00540 and CSW01_00545 are separated by 464 nucleotides CSW01_00545 and CSW01_00550 are separated by 176 nucleotides
CSW01_00535: CSW01_00535 - thiosulfate sulfurtransferase, at 98,787 to 99,107
_00535
CSW01_00540: CSW01_00540 - hypothetical protein, at 99,188 to 99,403
_00540
CSW01_00545: CSW01_00545 - TatD family deoxyribonuclease, at 99,868 to 100,635
_00545
CSW01_00550: CSW01_00550 - porphobilinogen synthase, at 100,812 to 101,855
_00550
Position (kb) 99
100
101 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 98.877 kb on + strand, within CSW01_00535 at 98.877 kb on + strand, within CSW01_00535 at 98.885 kb on - strand, within CSW01_00535 at 98.971 kb on - strand, within CSW01_00535 at 98.971 kb on - strand, within CSW01_00535 at 98.975 kb on - strand, within CSW01_00535 at 99.117 kb on - strand at 99.153 kb on + strand at 99.169 kb on + strand at 99.180 kb on + strand at 99.180 kb on + strand at 99.180 kb on + strand at 99.180 kb on + strand at 99.180 kb on + strand at 99.221 kb on + strand, within CSW01_00540 at 99.224 kb on - strand, within CSW01_00540 at 99.345 kb on + strand, within CSW01_00540 at 99.512 kb on + strand at 99.581 kb on - strand at 99.585 kb on + strand at 99.585 kb on + strand at 99.672 kb on + strand at 99.680 kb on - strand at 99.680 kb on - strand at 99.683 kb on + strand at 99.698 kb on + strand at 99.698 kb on + strand at 99.879 kb on + strand at 99.938 kb on + strand at 99.938 kb on + strand at 99.938 kb on + strand at 99.938 kb on + strand at 99.946 kb on - strand, within CSW01_00545 at 99.981 kb on - strand, within CSW01_00545 at 100.028 kb on - strand, within CSW01_00545 at 100.072 kb on + strand, within CSW01_00545 at 100.167 kb on + strand, within CSW01_00545 at 100.185 kb on - strand, within CSW01_00545 at 100.211 kb on + strand, within CSW01_00545 at 100.211 kb on + strand, within CSW01_00545 at 100.219 kb on - strand, within CSW01_00545 at 100.219 kb on - strand, within CSW01_00545 at 100.242 kb on + strand, within CSW01_00545 at 100.250 kb on - strand, within CSW01_00545 at 100.250 kb on - strand, within CSW01_00545 at 100.278 kb on + strand, within CSW01_00545 at 100.291 kb on + strand, within CSW01_00545 at 100.352 kb on + strand, within CSW01_00545 at 100.398 kb on + strand, within CSW01_00545 at 100.415 kb on - strand, within CSW01_00545 at 100.427 kb on - strand, within CSW01_00545 at 100.429 kb on + strand, within CSW01_00545 at 100.434 kb on + strand, within CSW01_00545 at 100.442 kb on + strand, within CSW01_00545 at 100.450 kb on - strand, within CSW01_00545 at 100.453 kb on - strand, within CSW01_00545 at 100.453 kb on - strand, within CSW01_00545 at 100.478 kb on + strand, within CSW01_00545 at 100.481 kb on - strand, within CSW01_00545 at 100.483 kb on + strand, within CSW01_00545 at 100.529 kb on - strand, within CSW01_00545 at 100.555 kb on + strand, within CSW01_00545 at 100.559 kb on + strand at 100.563 kb on - strand at 100.567 kb on - strand at 100.578 kb on + strand at 100.607 kb on + strand at 100.615 kb on - strand at 100.633 kb on + strand at 100.646 kb on - strand at 100.667 kb on + strand at 100.667 kb on + strand at 100.675 kb on - strand at 100.675 kb on - strand at 100.756 kb on + strand at 100.756 kb on + strand at 100.756 kb on + strand at 100.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 98,877 + CSW01_00535 0.28 +1.3 98,877 + CSW01_00535 0.28 -0.3 98,885 - CSW01_00535 0.31 -0.6 98,971 - CSW01_00535 0.57 -3.5 98,971 - CSW01_00535 0.57 +0.5 98,975 - CSW01_00535 0.59 -0.1 99,117 - +1.5 99,153 + +0.7 99,169 + +1.1 99,180 + +1.0 99,180 + +2.3 99,180 + -0.4 99,180 + -0.6 99,180 + -2.6 99,221 + CSW01_00540 0.15 -3.2 99,224 - CSW01_00540 0.17 +1.6 99,345 + CSW01_00540 0.73 +1.3 99,512 + +0.2 99,581 - -2.5 99,585 + +0.0 99,585 + -2.8 99,672 + -4.1 99,680 - -1.3 99,680 - +0.9 99,683 + +0.2 99,698 + +0.1 99,698 + +1.5 99,879 + -0.2 99,938 + -0.1 99,938 + -0.3 99,938 + +1.3 99,938 + +1.5 99,946 - CSW01_00545 0.10 -1.8 99,981 - CSW01_00545 0.15 -0.5 100,028 - CSW01_00545 0.21 +0.1 100,072 + CSW01_00545 0.27 -1.4 100,167 + CSW01_00545 0.39 +0.6 100,185 - CSW01_00545 0.41 -0.4 100,211 + CSW01_00545 0.45 +1.0 100,211 + CSW01_00545 0.45 -1.2 100,219 - CSW01_00545 0.46 +0.3 100,219 - CSW01_00545 0.46 +0.1 100,242 + CSW01_00545 0.49 -1.3 100,250 - CSW01_00545 0.50 +1.3 100,250 - CSW01_00545 0.50 +1.1 100,278 + CSW01_00545 0.53 +0.0 100,291 + CSW01_00545 0.55 +0.7 100,352 + CSW01_00545 0.63 -0.5 100,398 + CSW01_00545 0.69 -1.8 100,415 - CSW01_00545 0.71 +1.0 100,427 - CSW01_00545 0.73 +0.1 100,429 + CSW01_00545 0.73 +1.3 100,434 + CSW01_00545 0.74 -3.7 100,442 + CSW01_00545 0.75 -3.5 100,450 - CSW01_00545 0.76 -0.7 100,453 - CSW01_00545 0.76 +1.0 100,453 - CSW01_00545 0.76 -0.2 100,478 + CSW01_00545 0.79 +1.8 100,481 - CSW01_00545 0.80 +0.2 100,483 + CSW01_00545 0.80 -2.4 100,529 - CSW01_00545 0.86 +0.2 100,555 + CSW01_00545 0.89 +0.0 100,559 + -1.4 100,563 - +0.8 100,567 - +0.0 100,578 + +1.5 100,607 + +0.1 100,615 - +0.3 100,633 + -2.8 100,646 - -3.2 100,667 + -1.7 100,667 + -0.5 100,675 - +0.5 100,675 - -0.5 100,756 + +1.1 100,756 + +1.0 100,756 + +1.1 100,759 - +0.6
Or see this region's nucleotide sequence