Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00375

Experiment: ICP1_phage_0.23_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_0.23_MOI_rep1
68,301	+				-0.7
68,301	+				+2.4
68,304	-				-2.6
68,304	-				-0.1
68,306	+				+0.8
68,306	+				+1.2
68,309	-				+1.4
68,309	-				+0.6
68,314	-				+0.4
68,314	-				-4.0
68,347	-				-1.2
68,351	+		CSW01_00370	0.10	-3.5
68,359	-		CSW01_00370	0.11	-0.8
68,359	-		CSW01_00370	0.11	+0.2
68,409	+		CSW01_00370	0.16	-0.5
68,417	-		CSW01_00370	0.17	-0.7
68,417	-		CSW01_00370	0.17	-0.4
68,417	-		CSW01_00370	0.17	+1.2
68,417	-		CSW01_00370	0.17	+1.2
68,442	+		CSW01_00370	0.19	+0.6
68,468	+		CSW01_00370	0.22	+0.2
68,469	-		CSW01_00370	0.22	+1.9
68,470	+		CSW01_00370	0.22	-2.0
68,470	+		CSW01_00370	0.22	+1.1
68,478	-		CSW01_00370	0.23	-2.8
68,568	-		CSW01_00370	0.32	-2.3
68,588	-		CSW01_00370	0.34	+1.4
68,588	-		CSW01_00370	0.34	+0.1
68,588	-		CSW01_00370	0.34	+0.4
68,588	-		CSW01_00370	0.34	-1.3
68,616	+		CSW01_00370	0.37	-1.7
68,619	+		CSW01_00370	0.37	-0.1
68,632	+		CSW01_00370	0.39	+0.5
68,632	+		CSW01_00370	0.39	-1.0
68,634	+		CSW01_00370	0.39	+0.5
68,634	+		CSW01_00370	0.39	+0.2
68,634	+		CSW01_00370	0.39	-0.1
68,637	+		CSW01_00370	0.39	+0.6
68,640	-		CSW01_00370	0.40	-0.8
68,642	-		CSW01_00370	0.40	-0.3
68,642	-		CSW01_00370	0.40	+2.2
68,642	-		CSW01_00370	0.40	+0.5
68,644	+		CSW01_00370	0.40	+1.2
68,644	+		CSW01_00370	0.40	-1.2
68,644	+		CSW01_00370	0.40	-0.1
68,652	-		CSW01_00370	0.41	+0.5
68,652	-		CSW01_00370	0.41	+0.9
68,652	-		CSW01_00370	0.41	-1.4
68,652	-		CSW01_00370	0.41	+0.4
68,652	-		CSW01_00370	0.41	-3.7
68,698	+		CSW01_00370	0.45	-0.3
68,704	-		CSW01_00370	0.46	-2.2
68,725	+		CSW01_00370	0.48	+0.3
68,725	+		CSW01_00370	0.48	+0.0
68,760	+		CSW01_00370	0.52	-0.1
68,776	+		CSW01_00370	0.53	+0.8
68,776	+		CSW01_00370	0.53	+1.5
68,784	-		CSW01_00370	0.54	+1.5
68,786	+		CSW01_00370	0.54	+0.2
68,790	+		CSW01_00370	0.55	-0.1
68,811	+		CSW01_00370	0.57	-0.9
68,811	+		CSW01_00370	0.57	-3.8
68,811	+		CSW01_00370	0.57	-0.4
68,811	+		CSW01_00370	0.57	-0.9
68,811	+		CSW01_00370	0.57	-0.3
68,811	+		CSW01_00370	0.57	-0.4
68,819	-		CSW01_00370	0.58	-1.5
68,819	-		CSW01_00370	0.58	+1.2
68,819	-		CSW01_00370	0.58	+1.2
68,819	-		CSW01_00370	0.58	-2.0
68,819	-		CSW01_00370	0.58	-0.1
68,819	-		CSW01_00370	0.58	+0.1
68,819	-		CSW01_00370	0.58	+0.8
68,819	-		CSW01_00370	0.58	-0.3
68,819	-		CSW01_00370	0.58	+0.1
68,819	-		CSW01_00370	0.58	+0.7
68,819	-		CSW01_00370	0.58	+1.6
68,819	-		CSW01_00370	0.58	-4.1
68,838	+		CSW01_00370	0.60	+1.2
68,846	-		CSW01_00370	0.60	+1.1
68,848	+		CSW01_00370	0.61	+0.6
68,857	-		CSW01_00370	0.62	-0.2
68,870	+		CSW01_00370	0.63	-0.5
68,905	+		CSW01_00370	0.66	+0.2
68,907	+		CSW01_00370	0.67	-0.0
68,947	-		CSW01_00370	0.71	+0.7
68,996	+		CSW01_00370	0.76	+2.0
69,006	+		CSW01_00370	0.77	-1.8
69,014	-		CSW01_00370	0.78	-1.2
69,014	-		CSW01_00370	0.78	+1.1
69,064	+		CSW01_00370	0.83	-1.4
69,070	+		CSW01_00370	0.83	-0.1
69,073	-		CSW01_00370	0.84	+0.7
69,105	-		CSW01_00370	0.87	+0.4
69,138	+				+2.6
69,138	+				-1.3
69,138	-				-0.5
69,143	+				-1.4
69,146	-				+0.7
69,146	-				+0.3
69,146	-				-2.6
69,148	+				+0.7
69,148	+				-2.5
69,164	-				-1.7
69,228	+				+0.6
69,234	-				-1.5
69,245	+				-1.9
69,253	-				+0.9
69,254	-				-0.9
69,298	-				-0.4
69,313	+				+0.1
69,367	+				+0.7
69,367	+				+0.1
69,370	-				+0.4
69,417	-				+1.1
69,444	-		CSW01_00375	0.12	-3.1
69,454	-		CSW01_00375	0.13	+1.2
69,478	+		CSW01_00375	0.15	-0.4
69,478	+		CSW01_00375	0.15	+1.0
69,496	-		CSW01_00375	0.17	-2.7
69,518	-		CSW01_00375	0.18	-0.2
69,539	-		CSW01_00375	0.20	+0.5
69,542	-		CSW01_00375	0.20	-0.6
69,575	+		CSW01_00375	0.23	-0.2
69,583	-		CSW01_00375	0.24	+0.1
69,583	-		CSW01_00375	0.24	+0.0
69,585	+		CSW01_00375	0.24	-3.0
69,585	+		CSW01_00375	0.24	-0.6
69,592	+		CSW01_00375	0.25	-0.2
69,597	+		CSW01_00375	0.25	-2.3
69,621	+		CSW01_00375	0.27	-0.8
69,621	+		CSW01_00375	0.27	-2.5
69,621	+		CSW01_00375	0.27	-2.1
69,621	+		CSW01_00375	0.27	-1.7
69,621	+		CSW01_00375	0.27	-0.1
69,621	+		CSW01_00375	0.27	-1.5
69,626	+		CSW01_00375	0.27	-1.2
69,626	+		CSW01_00375	0.27	+0.7
69,628	+		CSW01_00375	0.28	+0.7
69,628	+		CSW01_00375	0.28	+1.4
69,628	+		CSW01_00375	0.28	+1.5
69,628	+		CSW01_00375	0.28	-0.1
69,628	+		CSW01_00375	0.28	+0.2
69,628	+		CSW01_00375	0.28	-3.2
69,628	+		CSW01_00375	0.28	-0.5
69,628	+		CSW01_00375	0.28	-4.7
69,628	+		CSW01_00375	0.28	-0.6
69,628	+		CSW01_00375	0.28	-0.7
69,628	+		CSW01_00375	0.28	+0.7
69,628	+		CSW01_00375	0.28	-2.3
69,628	+		CSW01_00375	0.28	-1.2
69,628	+		CSW01_00375	0.28	-2.4
69,628	+		CSW01_00375	0.28	-3.0
69,628	+		CSW01_00375	0.28	+0.6
69,628	+		CSW01_00375	0.28	+1.4
69,628	+		CSW01_00375	0.28	-2.5
69,628	+		CSW01_00375	0.28	+1.5
69,628	+		CSW01_00375	0.28	+0.9
69,628	+		CSW01_00375	0.28	-3.1
69,628	+		CSW01_00375	0.28	+0.8
69,629	-		CSW01_00375	0.28	-0.1
69,629	-		CSW01_00375	0.28	+1.4
69,636	-		CSW01_00375	0.28	-0.4
69,636	-		CSW01_00375	0.28	-2.7
69,636	-		CSW01_00375	0.28	-2.0
69,636	-		CSW01_00375	0.28	+1.3
69,636	-		CSW01_00375	0.28	+0.4
69,636	-		CSW01_00375	0.28	+1.3
69,636	-		CSW01_00375	0.28	-3.0
69,636	-		CSW01_00375	0.28	-2.2
69,636	-		CSW01_00375	0.28	+1.8
69,636	-		CSW01_00375	0.28	+0.6
69,636	-		CSW01_00375	0.28	+0.9
69,636	-		CSW01_00375	0.28	-0.7
69,636	-		CSW01_00375	0.28	-1.3
69,636	-		CSW01_00375	0.28	-0.6
69,636	-		CSW01_00375	0.28	+0.9
69,636	-		CSW01_00375	0.28	-3.3
69,636	-		CSW01_00375	0.28	+0.4
69,636	-		CSW01_00375	0.28	+1.7
69,704	+		CSW01_00375	0.34	+1.6
69,712	-		CSW01_00375	0.34	+1.7
69,712	-		CSW01_00375	0.34	-0.2
69,724	-		CSW01_00375	0.35	+1.4
69,724	-		CSW01_00375	0.35	-2.5
69,724	-		CSW01_00375	0.35	-3.8
69,733	+		CSW01_00375	0.36	-3.9
69,733	+		CSW01_00375	0.36	-0.6
69,733	+		CSW01_00375	0.36	+0.6
69,741	-		CSW01_00375	0.37	-2.8
69,764	-		CSW01_00375	0.39	-0.1
69,769	+		CSW01_00375	0.39	-1.3
69,817	+		CSW01_00375	0.43	+1.0
69,817	+		CSW01_00375	0.43	-3.4
69,817	+		CSW01_00375	0.43	+0.5
69,834	+		CSW01_00375	0.45	-2.8
69,834	+		CSW01_00375	0.45	+0.7
69,835	-		CSW01_00375	0.45	+0.6
69,838	-		CSW01_00375	0.45	-3.0
69,855	-		CSW01_00375	0.46	-0.2
69,862	+		CSW01_00375	0.47	+0.2
69,862	+		CSW01_00375	0.47	+2.7
69,868	-		CSW01_00375	0.47	+1.1
69,870	-		CSW01_00375	0.48	+0.7
69,894	+		CSW01_00375	0.50	-1.7
69,895	+		CSW01_00375	0.50	-1.0
69,895	+		CSW01_00375	0.50	+0.7
69,896	+		CSW01_00375	0.50	+0.2
69,902	+		CSW01_00375	0.50	+0.4
69,903	-		CSW01_00375	0.50	+0.4
69,903	-		CSW01_00375	0.50	+0.9
70,024	+		CSW01_00375	0.60	-0.2
70,024	+		CSW01_00375	0.60	-1.2
70,024	+		CSW01_00375	0.60	-0.7
70,031	+		CSW01_00375	0.61	+1.2
70,032	-		CSW01_00375	0.61	+0.2
70,032	-		CSW01_00375	0.61	-0.0
70,032	-		CSW01_00375	0.61	-2.8
70,044	-		CSW01_00375	0.62	+0.8
70,057	+		CSW01_00375	0.63	-1.8
70,093	+		CSW01_00375	0.66	-0.2
70,103	+		CSW01_00375	0.67	+1.4
70,111	-		CSW01_00375	0.68	-0.8
70,132	-		CSW01_00375	0.69	+1.1
70,158	+		CSW01_00375	0.72	-0.9
70,166	-		CSW01_00375	0.72	-0.8
70,177	+		CSW01_00375	0.73	-3.2
70,177	+		CSW01_00375	0.73	-1.7
70,177	+		CSW01_00375	0.73	+1.6
70,177	+		CSW01_00375	0.73	+0.8
70,177	+		CSW01_00375	0.73	-0.7
70,177	+		CSW01_00375	0.73	+1.3
70,177	+		CSW01_00375	0.73	-1.3
70,185	-		CSW01_00375	0.74	-3.1
70,185	-		CSW01_00375	0.74	-5.3
70,185	-		CSW01_00375	0.74	-0.5
70,210	-		CSW01_00375	0.76	-0.1
70,215	-		CSW01_00375	0.76	+0.6
70,215	-		CSW01_00375	0.76	-0.5
70,215	-		CSW01_00375	0.76	+0.5
70,230	+		CSW01_00375	0.78	+0.8
70,254	+		CSW01_00375	0.80	-0.4
70,260	+		CSW01_00375	0.80	-3.9
70,286	-		CSW01_00375	0.82	-3.2
70,291	-		CSW01_00375	0.83	+0.3
70,291	-		CSW01_00375	0.83	+0.2
70,293	-		CSW01_00375	0.83	-0.4
70,328	+		CSW01_00375	0.86	+0.7
70,351	+		CSW01_00375	0.88	-4.9
70,351	+		CSW01_00375	0.88	-0.3
70,359	-		CSW01_00375	0.88	-1.8
70,359	-		CSW01_00375	0.88	-0.6
70,364	+		CSW01_00375	0.89	+0.4
70,367	-		CSW01_00375	0.89	+1.1
70,374	+		CSW01_00375	0.90	-0.1
70,377	-		CSW01_00375	0.90	+1.2
70,382	+				-2.8
70,382	-				-1.1
70,390	-				-1.5
70,390	-				-3.1
70,390	-				+1.2
70,390	-				-0.7
70,409	-				+0.5
70,486	-				-1.4
70,528	+				+0.6
70,528	+				-0.1
70,528	+				-1.7
70,528	+				+1.4
70,528	+				-4.5
70,528	+				-0.9
70,536	-				-0.9
70,536	-				-1.7
70,536	-				+1.0
70,554	-				-1.5
70,576	+				-1.0
70,576	+				-3.3
70,591	+				+2.8
70,605	+				-1.2
70,771	-		CSW01_00380	0.59	-3.3
70,799	+		CSW01_00380	0.69	-3.1
70,850	+		CSW01_00380	0.87	-2.5
70,894	-				+0.0
70,944	+				+0.8
70,945	+				+0.3
70,965	+				+3.1
70,973	-				-1.0
70,973	-				-0.1
70,975	-				-2.4
70,980	+				+0.4
70,981	-				-1.2
70,988	-				-1.2
70,994	+				+0.6
70,995	-				+1.7
70,995	-				+1.8
70,995	-				+0.4
71,030	+		CSW01_00385	0.12	+1.8
71,117	+		CSW01_00385	0.31	+0.4
71,132	+		CSW01_00385	0.34	-1.6
71,132	+		CSW01_00385	0.34	-0.6
71,140	-		CSW01_00385	0.35	+0.7
71,150	-		CSW01_00385	0.38	-1.7
71,150	-		CSW01_00385	0.38	+1.1
71,241	-		CSW01_00385	0.57	-2.3
71,241	-		CSW01_00385	0.57	-0.5
71,273	+		CSW01_00385	0.64	-3.3
71,274	-		CSW01_00385	0.65	+1.0
71,281	-		CSW01_00385	0.66	-2.8
71,292	+		CSW01_00385	0.68	+1.1
71,342	+		CSW01_00385	0.79	+0.5
71,342	-		CSW01_00385	0.79	+1.8
71,413	-				-0.1
71,430	-				-0.5