Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00055

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00050 and CSW01_00055 are separated by 311 nucleotidesCSW01_00055 and CSW01_00060 are separated by 57 nucleotides CSW01_00050: CSW01_00050 - amino acid ABC transporter substrate-binding protein, at 6,354 to 7,100 _00050 CSW01_00055: CSW01_00055 - chromosomal replication initiator protein DnaA, at 7,412 to 8,815 _00055 CSW01_00060: CSW01_00060 - DNA polymerase III subunit beta, at 8,873 to 9,973 _00060 Position (kb) 7 8 9Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6.444 kb on + strand, within CSW01_00050at 6.527 kb on + strand, within CSW01_00050at 6.584 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.596 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.639 kb on - strand, within CSW01_00050at 6.685 kb on - strand, within CSW01_00050at 6.758 kb on - strand, within CSW01_00050at 6.775 kb on + strand, within CSW01_00050at 6.775 kb on + strand, within CSW01_00050at 6.783 kb on - strand, within CSW01_00050at 6.806 kb on + strand, within CSW01_00050at 6.819 kb on - strand, within CSW01_00050at 6.847 kb on - strand, within CSW01_00050at 6.860 kb on + strand, within CSW01_00050at 6.865 kb on + strand, within CSW01_00050at 6.865 kb on + strand, within CSW01_00050at 6.865 kb on + strand, within CSW01_00050at 6.865 kb on + strand, within CSW01_00050at 6.873 kb on - strand, within CSW01_00050at 6.873 kb on - strand, within CSW01_00050at 6.953 kb on - strand, within CSW01_00050at 6.956 kb on + strand, within CSW01_00050at 6.956 kb on + strand, within CSW01_00050at 6.956 kb on + strand, within CSW01_00050at 6.956 kb on + strand, within CSW01_00050at 6.963 kb on + strand, within CSW01_00050at 6.964 kb on - strand, within CSW01_00050at 6.964 kb on - strand, within CSW01_00050at 6.964 kb on - strand, within CSW01_00050at 6.971 kb on - strand, within CSW01_00050at 6.990 kb on + strand, within CSW01_00050at 6.990 kb on + strand, within CSW01_00050at 6.998 kb on - strand, within CSW01_00050at 6.998 kb on - strand, within CSW01_00050at 6.998 kb on - strand, within CSW01_00050at 7.047 kb on - strandat 7.069 kb on - strandat 7.070 kb on - strandat 7.231 kb on + strandat 7.257 kb on + strandat 7.306 kb on + strandat 7.333 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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6,444 + CSW01_00050 0.12 -3.4
6,527 + CSW01_00050 0.23 +0.6
6,584 + CSW01_00050 0.31 +1.0
6,594 + CSW01_00050 0.32 -1.2
6,594 + CSW01_00050 0.32 +0.5
6,594 + CSW01_00050 0.32 +0.6
6,594 + CSW01_00050 0.32 +1.8
6,594 + CSW01_00050 0.32 -2.2
6,594 + CSW01_00050 0.32 +0.2
6,594 + CSW01_00050 0.32 -1.0
6,594 + CSW01_00050 0.32 +0.8
6,594 + CSW01_00050 0.32 +1.8
6,596 - CSW01_00050 0.32 +2.1
6,602 - CSW01_00050 0.33 -0.2
6,602 - CSW01_00050 0.33 +2.0
6,602 - CSW01_00050 0.33 -0.5
6,602 - CSW01_00050 0.33 +0.6
6,602 - CSW01_00050 0.33 +0.3
6,602 - CSW01_00050 0.33 +0.6
6,602 - CSW01_00050 0.33 -2.2
6,602 - CSW01_00050 0.33 -4.1
6,602 - CSW01_00050 0.33 -2.9
6,602 - CSW01_00050 0.33 +1.4
6,602 - CSW01_00050 0.33 -0.6
6,602 - CSW01_00050 0.33 -0.0
6,639 - CSW01_00050 0.38 -3.1
6,685 - CSW01_00050 0.44 -0.3
6,758 - CSW01_00050 0.54 -0.1
6,775 + CSW01_00050 0.56 +1.4
6,775 + CSW01_00050 0.56 -3.3
6,783 - CSW01_00050 0.57 +0.9
6,806 + CSW01_00050 0.61 +0.8
6,819 - CSW01_00050 0.62 -0.4
6,847 - CSW01_00050 0.66 +0.1
6,860 + CSW01_00050 0.68 +0.6
6,865 + CSW01_00050 0.68 +0.4
6,865 + CSW01_00050 0.68 +1.5
6,865 + CSW01_00050 0.68 -0.6
6,865 + CSW01_00050 0.68 -2.6
6,873 - CSW01_00050 0.69 +1.6
6,873 - CSW01_00050 0.69 -0.5
6,953 - CSW01_00050 0.80 +0.3
6,956 + CSW01_00050 0.81 -4.6
6,956 + CSW01_00050 0.81 -2.5
6,956 + CSW01_00050 0.81 +0.7
6,956 + CSW01_00050 0.81 +0.5
6,963 + CSW01_00050 0.82 +1.4
6,964 - CSW01_00050 0.82 +1.2
6,964 - CSW01_00050 0.82 -0.9
6,964 - CSW01_00050 0.82 +0.4
6,971 - CSW01_00050 0.83 +1.6
6,990 + CSW01_00050 0.85 -3.9
6,990 + CSW01_00050 0.85 -1.0
6,998 - CSW01_00050 0.86 +0.9
6,998 - CSW01_00050 0.86 +1.1
6,998 - CSW01_00050 0.86 -0.3
7,047 - +0.7
7,069 - -0.8
7,070 - +1.5
7,231 + -0.5
7,257 + +0.6
7,306 + +1.2
7,333 + +0.4

Or see this region's nucleotide sequence