Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4283 and Ac3H11_4284 overlap by 44 nucleotides Ac3H11_4284 and Ac3H11_4285 are separated by 75 nucleotides Ac3H11_4285 and Ac3H11_4286 are separated by 213 nucleotides
Ac3H11_4283 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 59,261 to 61,324
_4283
Ac3H11_4284 - hypothetical protein, at 61,281 to 61,403
_4284
Ac3H11_4285 - diguanylate cyclase, at 61,479 to 62,735
_4285
Ac3H11_4286 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 62,949 to 64,439
_4286
Position (kb) 61
62
63 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 61.282 kb on + strand at 61.283 kb on - strand at 61.433 kb on + strand at 61.433 kb on + strand at 61.433 kb on + strand at 61.433 kb on + strand at 61.433 kb on + strand at 61.433 kb on + strand at 62.481 kb on - strand, within Ac3H11_4285 at 62.620 kb on - strand at 62.810 kb on + strand at 62.810 kb on + strand at 62.810 kb on + strand at 62.810 kb on + strand at 62.810 kb on + strand at 62.811 kb on - strand at 62.811 kb on - strand at 62.811 kb on - strand at 62.811 kb on - strand at 62.811 kb on - strand at 63.048 kb on + strand at 63.048 kb on + strand at 63.048 kb on + strand at 63.049 kb on - strand at 63.049 kb on - strand at 63.261 kb on + strand, within Ac3H11_4286 at 63.261 kb on + strand, within Ac3H11_4286 at 63.261 kb on + strand, within Ac3H11_4286 at 63.261 kb on + strand, within Ac3H11_4286 at 63.261 kb on + strand, within Ac3H11_4286 at 63.262 kb on - strand, within Ac3H11_4286 at 63.262 kb on - strand, within Ac3H11_4286 at 63.262 kb on - strand, within Ac3H11_4286 at 63.262 kb on - strand, within Ac3H11_4286 at 63.262 kb on - strand, within Ac3H11_4286 at 63.262 kb on - strand, within Ac3H11_4286 at 63.262 kb on - strand, within Ac3H11_4286 at 63.330 kb on + strand, within Ac3H11_4286 at 63.330 kb on + strand, within Ac3H11_4286 at 63.330 kb on + strand, within Ac3H11_4286 at 63.331 kb on - strand, within Ac3H11_4286 at 63.348 kb on + strand, within Ac3H11_4286 at 63.348 kb on + strand, within Ac3H11_4286 at 63.384 kb on + strand, within Ac3H11_4286 at 63.384 kb on + strand, within Ac3H11_4286 at 63.496 kb on - strand, within Ac3H11_4286 at 63.496 kb on - strand, within Ac3H11_4286 at 63.496 kb on - strand, within Ac3H11_4286 at 63.567 kb on + strand, within Ac3H11_4286 at 63.567 kb on + strand, within Ac3H11_4286 at 63.567 kb on + strand, within Ac3H11_4286 at 63.567 kb on + strand, within Ac3H11_4286 at 63.567 kb on + strand, within Ac3H11_4286 at 63.567 kb on + strand, within Ac3H11_4286 at 63.567 kb on + strand, within Ac3H11_4286 at 63.568 kb on - strand, within Ac3H11_4286 at 63.568 kb on - strand, within Ac3H11_4286 at 63.568 kb on - strand, within Ac3H11_4286
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 61,282 + -2.4 61,283 - -0.4 61,433 + +0.6 61,433 + -0.1 61,433 + -0.1 61,433 + -0.0 61,433 + +1.0 61,433 + -3.3 62,481 - Ac3H11_4285 0.80 -0.5 62,620 - -1.9 62,810 + +3.8 62,810 + -1.3 62,810 + +1.0 62,810 + -2.4 62,810 + -3.8 62,811 - -0.6 62,811 - +0.5 62,811 - +0.3 62,811 - -1.7 62,811 - +0.2 63,048 + -0.9 63,048 + +2.1 63,048 + -1.0 63,049 - -1.4 63,049 - -0.4 63,261 + Ac3H11_4286 0.21 +0.7 63,261 + Ac3H11_4286 0.21 -1.0 63,261 + Ac3H11_4286 0.21 -2.3 63,261 + Ac3H11_4286 0.21 +0.6 63,261 + Ac3H11_4286 0.21 +0.1 63,262 - Ac3H11_4286 0.21 +2.5 63,262 - Ac3H11_4286 0.21 +1.8 63,262 - Ac3H11_4286 0.21 -3.8 63,262 - Ac3H11_4286 0.21 -2.5 63,262 - Ac3H11_4286 0.21 +2.3 63,262 - Ac3H11_4286 0.21 -3.7 63,262 - Ac3H11_4286 0.21 -0.4 63,330 + Ac3H11_4286 0.26 +2.3 63,330 + Ac3H11_4286 0.26 -0.2 63,330 + Ac3H11_4286 0.26 +1.4 63,331 - Ac3H11_4286 0.26 -1.3 63,348 + Ac3H11_4286 0.27 +0.3 63,348 + Ac3H11_4286 0.27 -0.2 63,384 + Ac3H11_4286 0.29 -0.5 63,384 + Ac3H11_4286 0.29 +0.4 63,496 - Ac3H11_4286 0.37 -0.3 63,496 - Ac3H11_4286 0.37 -1.7 63,496 - Ac3H11_4286 0.37 +1.8 63,567 + Ac3H11_4286 0.41 +2.3 63,567 + Ac3H11_4286 0.41 +2.0 63,567 + Ac3H11_4286 0.41 -0.1 63,567 + Ac3H11_4286 0.41 -3.5 63,567 + Ac3H11_4286 0.41 -0.6 63,567 + Ac3H11_4286 0.41 +1.4 63,567 + Ac3H11_4286 0.41 -1.8 63,568 - Ac3H11_4286 0.42 +1.2 63,568 - Ac3H11_4286 0.42 -4.3 63,568 - Ac3H11_4286 0.42 +0.8
Or see this region's nucleotide sequence