Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3866 and Ac3H11_3867 are separated by 29 nucleotides Ac3H11_3867 and Ac3H11_3868 overlap by 9 nucleotides
Ac3H11_3866 - Regulatory protein, LuxR, at 83,572 to 84,744
_3866
Ac3H11_3867 - hypothetical protein, at 84,774 to 84,926
_3867
Ac3H11_3868 - peptidase, M48 family( EC:3.4.24.- ), at 84,918 to 86,549
_3868
Position (kb) 84
85 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 83.791 kb on + strand, within Ac3H11_3866 at 83.792 kb on - strand, within Ac3H11_3866 at 83.792 kb on - strand, within Ac3H11_3866 at 83.895 kb on + strand, within Ac3H11_3866 at 83.932 kb on + strand, within Ac3H11_3866 at 83.932 kb on + strand, within Ac3H11_3866 at 83.932 kb on + strand, within Ac3H11_3866 at 83.933 kb on - strand, within Ac3H11_3866 at 84.016 kb on + strand, within Ac3H11_3866 at 84.016 kb on + strand, within Ac3H11_3866 at 84.016 kb on + strand, within Ac3H11_3866 at 84.016 kb on + strand, within Ac3H11_3866 at 84.017 kb on - strand, within Ac3H11_3866 at 84.017 kb on - strand, within Ac3H11_3866 at 84.017 kb on - strand, within Ac3H11_3866 at 84.017 kb on - strand, within Ac3H11_3866 at 84.017 kb on - strand, within Ac3H11_3866 at 84.211 kb on + strand, within Ac3H11_3866 at 84.211 kb on + strand, within Ac3H11_3866 at 84.670 kb on + strand at 84.671 kb on - strand at 84.671 kb on - strand at 84.671 kb on - strand at 84.757 kb on + strand at 85.002 kb on + strand at 85.003 kb on - strand at 85.089 kb on + strand, within Ac3H11_3868 at 85.089 kb on + strand, within Ac3H11_3868 at 85.089 kb on + strand, within Ac3H11_3868 at 85.089 kb on + strand, within Ac3H11_3868 at 85.090 kb on - strand, within Ac3H11_3868 at 85.090 kb on - strand, within Ac3H11_3868 at 85.090 kb on - strand, within Ac3H11_3868 at 85.195 kb on - strand, within Ac3H11_3868 at 85.195 kb on - strand, within Ac3H11_3868 at 85.368 kb on + strand, within Ac3H11_3868 at 85.369 kb on - strand, within Ac3H11_3868 at 85.755 kb on + strand, within Ac3H11_3868 at 85.812 kb on + strand, within Ac3H11_3868 at 85.812 kb on + strand, within Ac3H11_3868 at 85.813 kb on - strand, within Ac3H11_3868 at 85.813 kb on - strand, within Ac3H11_3868 at 85.813 kb on - strand, within Ac3H11_3868 at 85.813 kb on - strand, within Ac3H11_3868 at 85.813 kb on - strand, within Ac3H11_3868 at 85.813 kb on - strand, within Ac3H11_3868 at 85.891 kb on - strand, within Ac3H11_3868 at 85.891 kb on - strand, within Ac3H11_3868 at 85.891 kb on - strand, within Ac3H11_3868
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 83,791 + Ac3H11_3866 0.19 -2.8 83,792 - Ac3H11_3866 0.19 -0.5 83,792 - Ac3H11_3866 0.19 -0.1 83,895 + Ac3H11_3866 0.28 -2.5 83,932 + Ac3H11_3866 0.31 +2.5 83,932 + Ac3H11_3866 0.31 +0.2 83,932 + Ac3H11_3866 0.31 +0.8 83,933 - Ac3H11_3866 0.31 -2.1 84,016 + Ac3H11_3866 0.38 +1.2 84,016 + Ac3H11_3866 0.38 -3.3 84,016 + Ac3H11_3866 0.38 +0.1 84,016 + Ac3H11_3866 0.38 -0.6 84,017 - Ac3H11_3866 0.38 -2.0 84,017 - Ac3H11_3866 0.38 +1.2 84,017 - Ac3H11_3866 0.38 -3.6 84,017 - Ac3H11_3866 0.38 +0.2 84,017 - Ac3H11_3866 0.38 -0.7 84,211 + Ac3H11_3866 0.54 +0.2 84,211 + Ac3H11_3866 0.54 +0.5 84,670 + -1.5 84,671 - -0.5 84,671 - -2.8 84,671 - +0.9 84,757 + -0.2 85,002 + +0.1 85,003 - +0.6 85,089 + Ac3H11_3868 0.10 -0.8 85,089 + Ac3H11_3868 0.10 +1.7 85,089 + Ac3H11_3868 0.10 -0.7 85,089 + Ac3H11_3868 0.10 -0.9 85,090 - Ac3H11_3868 0.11 -2.3 85,090 - Ac3H11_3868 0.11 +1.8 85,090 - Ac3H11_3868 0.11 -2.3 85,195 - Ac3H11_3868 0.17 -1.3 85,195 - Ac3H11_3868 0.17 +0.9 85,368 + Ac3H11_3868 0.28 +1.7 85,369 - Ac3H11_3868 0.28 -0.6 85,755 + Ac3H11_3868 0.51 -1.1 85,812 + Ac3H11_3868 0.55 +1.5 85,812 + Ac3H11_3868 0.55 +0.9 85,813 - Ac3H11_3868 0.55 -2.6 85,813 - Ac3H11_3868 0.55 -1.4 85,813 - Ac3H11_3868 0.55 -0.8 85,813 - Ac3H11_3868 0.55 -0.7 85,813 - Ac3H11_3868 0.55 -2.9 85,813 - Ac3H11_3868 0.55 -1.5 85,891 - Ac3H11_3868 0.60 -0.3 85,891 - Ac3H11_3868 0.60 +1.0 85,891 - Ac3H11_3868 0.60 -0.5
Or see this region's nucleotide sequence