Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3723 and Ac3H11_3724 are separated by 102 nucleotides Ac3H11_3724 and Ac3H11_3725 overlap by 4 nucleotides
Ac3H11_3723 - FAD/FMN-containing dehydrogenase, at 82,919 to 84,307
_3723
Ac3H11_3724 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 84,410 to 85,330
_3724
Ac3H11_3725 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 85,327 to 86,169
_3725
Position (kb) 84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 83.410 kb on - strand, within Ac3H11_3723 at 83.529 kb on + strand, within Ac3H11_3723 at 83.529 kb on + strand, within Ac3H11_3723 at 83.530 kb on - strand, within Ac3H11_3723 at 83.709 kb on + strand, within Ac3H11_3723 at 84.057 kb on + strand, within Ac3H11_3723 at 84.057 kb on + strand, within Ac3H11_3723 at 84.058 kb on - strand, within Ac3H11_3723 at 84.058 kb on - strand, within Ac3H11_3723 at 84.058 kb on - strand, within Ac3H11_3723 at 84.312 kb on + strand at 84.313 kb on - strand at 84.453 kb on - strand at 84.453 kb on - strand at 84.669 kb on + strand, within Ac3H11_3724 at 84.669 kb on + strand, within Ac3H11_3724 at 84.670 kb on - strand, within Ac3H11_3724 at 84.738 kb on + strand, within Ac3H11_3724 at 84.738 kb on + strand, within Ac3H11_3724 at 85.092 kb on + strand, within Ac3H11_3724 at 85.178 kb on + strand, within Ac3H11_3724 at 86.072 kb on + strand, within Ac3H11_3725
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 83,410 - Ac3H11_3723 0.35 -2.2 83,529 + Ac3H11_3723 0.44 +2.0 83,529 + Ac3H11_3723 0.44 +0.5 83,530 - Ac3H11_3723 0.44 +0.2 83,709 + Ac3H11_3723 0.57 +1.2 84,057 + Ac3H11_3723 0.82 -2.8 84,057 + Ac3H11_3723 0.82 +0.5 84,058 - Ac3H11_3723 0.82 -0.8 84,058 - Ac3H11_3723 0.82 +1.4 84,058 - Ac3H11_3723 0.82 +0.4 84,312 + -0.5 84,313 - +1.3 84,453 - +2.0 84,453 - -1.7 84,669 + Ac3H11_3724 0.28 -1.2 84,669 + Ac3H11_3724 0.28 -2.3 84,670 - Ac3H11_3724 0.28 +3.0 84,738 + Ac3H11_3724 0.36 +1.0 84,738 + Ac3H11_3724 0.36 +1.0 85,092 + Ac3H11_3724 0.74 -3.0 85,178 + Ac3H11_3724 0.83 +0.5 86,072 + Ac3H11_3725 0.88 -2.1
Or see this region's nucleotide sequence