Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2740

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2738 and Ac3H11_2739 overlap by 4 nucleotidesAc3H11_2739 and Ac3H11_2740 overlap by 4 nucleotidesAc3H11_2740 and Ac3H11_2741 are separated by 287 nucleotides Ac3H11_2738 - Glutathione peroxidase family protein, at 1,038,150 to 1,038,698 _2738 Ac3H11_2739 - FIG00481831: hypothetical protein, at 1,038,695 to 1,039,228 _2739 Ac3H11_2740 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 1,039,225 to 1,040,109 _2740 Ac3H11_2741 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 1,040,397 to 1,041,302 _2741 Position (kb) 1039 1040 1041Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1038.377 kb on - strand, within Ac3H11_2738at 1038.571 kb on + strand, within Ac3H11_2738at 1038.704 kb on + strandat 1038.705 kb on - strandat 1038.715 kb on - strandat 1038.868 kb on - strand, within Ac3H11_2739at 1039.289 kb on + strandat 1039.289 kb on + strandat 1039.290 kb on - strandat 1040.179 kb on + strandat 1040.200 kb on - strandat 1040.280 kb on + strandat 1040.459 kb on - strandat 1040.511 kb on + strand, within Ac3H11_2741at 1040.512 kb on - strand, within Ac3H11_2741at 1041.084 kb on - strand, within Ac3H11_2741

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,038,377 - Ac3H11_2738 0.41 -3.5
1,038,571 + Ac3H11_2738 0.77 -3.9
1,038,704 + -2.6
1,038,705 - +0.7
1,038,715 - -3.6
1,038,868 - Ac3H11_2739 0.32 -2.0
1,039,289 + +1.3
1,039,289 + +0.2
1,039,290 - -0.7
1,040,179 + +0.4
1,040,200 - -3.5
1,040,280 + -1.9
1,040,459 - +1.6
1,040,511 + Ac3H11_2741 0.13 -3.9
1,040,512 - Ac3H11_2741 0.13 +1.4
1,041,084 - Ac3H11_2741 0.76 -1.4

Or see this region's nucleotide sequence