Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2267 and Ac3H11_2268 are separated by 321 nucleotides Ac3H11_2268 and Ac3H11_2269 are separated by 36 nucleotides Ac3H11_2269 and Ac3H11_2270 overlap by 8 nucleotides
Ac3H11_2267 - Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44), at 500,360 to 500,713
_2267
Ac3H11_2268 - hypothetical protein, at 501,035 to 501,520
_2268
Ac3H11_2269 - Sensory box histidine kinase/response regulator, at 501,557 to 504,610
_2269
Ac3H11_2270 - Pole remodelling regulatory diguanylate cyclase, at 504,603 to 505,772
_2270
Position (kb) 501
502
503
504
505 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 500.633 kb on + strand, within Ac3H11_2267 at 500.633 kb on + strand, within Ac3H11_2267 at 500.633 kb on + strand, within Ac3H11_2267 at 500.633 kb on + strand, within Ac3H11_2267 at 500.633 kb on + strand, within Ac3H11_2267 at 500.633 kb on + strand, within Ac3H11_2267 at 500.633 kb on + strand, within Ac3H11_2267 at 500.633 kb on + strand, within Ac3H11_2267 at 500.633 kb on + strand, within Ac3H11_2267 at 500.634 kb on - strand, within Ac3H11_2267 at 500.634 kb on - strand, within Ac3H11_2267 at 500.660 kb on + strand, within Ac3H11_2267 at 500.660 kb on + strand, within Ac3H11_2267 at 500.660 kb on + strand, within Ac3H11_2267 at 500.660 kb on + strand, within Ac3H11_2267 at 500.661 kb on - strand, within Ac3H11_2267 at 500.661 kb on - strand, within Ac3H11_2267 at 500.661 kb on - strand, within Ac3H11_2267 at 500.661 kb on - strand, within Ac3H11_2267 at 500.661 kb on - strand, within Ac3H11_2267 at 500.661 kb on - strand, within Ac3H11_2267 at 500.661 kb on - strand, within Ac3H11_2267 at 500.788 kb on + strand at 500.788 kb on + strand at 500.789 kb on - strand at 500.789 kb on - strand at 500.789 kb on - strand at 500.789 kb on - strand at 500.817 kb on + strand at 500.877 kb on - strand at 500.877 kb on - strand at 500.877 kb on - strand at 500.879 kb on + strand at 500.879 kb on + strand at 500.879 kb on + strand at 500.880 kb on - strand at 500.880 kb on - strand at 500.880 kb on - strand at 500.923 kb on + strand at 500.924 kb on - strand at 500.925 kb on + strand at 500.926 kb on - strand at 500.951 kb on - strand at 501.065 kb on + strand at 501.065 kb on + strand at 501.066 kb on - strand at 501.066 kb on - strand at 501.066 kb on - strand at 501.224 kb on + strand, within Ac3H11_2268 at 501.323 kb on + strand, within Ac3H11_2268 at 501.323 kb on + strand, within Ac3H11_2268 at 501.323 kb on + strand, within Ac3H11_2268 at 501.323 kb on + strand, within Ac3H11_2268 at 501.324 kb on - strand, within Ac3H11_2268 at 501.324 kb on - strand, within Ac3H11_2268 at 501.473 kb on + strand at 501.473 kb on + strand at 501.474 kb on - strand at 501.474 kb on - strand at 501.474 kb on - strand at 501.476 kb on + strand at 501.476 kb on + strand at 501.476 kb on + strand at 501.476 kb on + strand at 501.476 kb on + strand at 501.476 kb on + strand at 501.476 kb on + strand at 501.476 kb on + strand at 501.476 kb on + strand at 501.476 kb on + strand at 501.477 kb on - strand at 501.477 kb on - strand at 501.477 kb on - strand at 501.477 kb on - strand at 501.518 kb on + strand at 501.518 kb on + strand at 501.611 kb on + strand at 501.611 kb on + strand at 501.611 kb on + strand at 501.611 kb on + strand at 501.611 kb on + strand at 501.612 kb on - strand at 501.612 kb on - strand at 501.612 kb on - strand at 501.612 kb on - strand at 501.612 kb on - strand at 501.612 kb on - strand at 501.612 kb on - strand at 501.612 kb on - strand at 501.612 kb on - strand at 501.612 kb on - strand at 501.612 kb on - strand at 501.612 kb on - strand at 501.612 kb on - strand at 501.635 kb on + strand at 501.635 kb on + strand at 501.636 kb on - strand at 501.636 kb on - strand at 501.720 kb on - strand at 501.769 kb on + strand at 501.797 kb on + strand at 501.798 kb on - strand at 501.872 kb on + strand, within Ac3H11_2269 at 501.872 kb on + strand, within Ac3H11_2269 at 501.872 kb on + strand, within Ac3H11_2269 at 501.872 kb on + strand, within Ac3H11_2269 at 501.872 kb on + strand, within Ac3H11_2269 at 501.872 kb on + strand, within Ac3H11_2269 at 501.873 kb on - strand, within Ac3H11_2269 at 501.873 kb on - strand, within Ac3H11_2269 at 501.873 kb on - strand, within Ac3H11_2269 at 501.873 kb on - strand, within Ac3H11_2269 at 501.873 kb on - strand, within Ac3H11_2269 at 501.873 kb on - strand, within Ac3H11_2269 at 501.873 kb on - strand, within Ac3H11_2269 at 501.873 kb on - strand, within Ac3H11_2269 at 501.873 kb on - strand, within Ac3H11_2269 at 502.472 kb on + strand, within Ac3H11_2269 at 502.472 kb on + strand, within Ac3H11_2269 at 502.472 kb on + strand, within Ac3H11_2269 at 502.473 kb on - strand, within Ac3H11_2269 at 502.473 kb on - strand, within Ac3H11_2269 at 502.473 kb on - strand, within Ac3H11_2269 at 502.473 kb on - strand, within Ac3H11_2269 at 502.666 kb on - strand, within Ac3H11_2269 at 503.666 kb on + strand, within Ac3H11_2269 at 503.666 kb on + strand, within Ac3H11_2269 at 504.041 kb on + strand, within Ac3H11_2269 at 504.042 kb on - strand, within Ac3H11_2269 at 504.042 kb on - strand, within Ac3H11_2269 at 504.042 kb on - strand, within Ac3H11_2269 at 504.172 kb on + strand, within Ac3H11_2269 at 504.173 kb on - strand, within Ac3H11_2269 at 504.259 kb on - strand, within Ac3H11_2269 at 504.259 kb on - strand, within Ac3H11_2269 at 504.259 kb on - strand, within Ac3H11_2269 at 504.259 kb on - strand, within Ac3H11_2269 at 504.497 kb on + strand at 504.497 kb on + strand at 504.498 kb on - strand at 504.498 kb on - strand at 504.498 kb on - strand at 504.498 kb on - strand at 504.498 kb on - strand at 504.527 kb on + strand at 504.527 kb on + strand at 504.528 kb on - strand at 504.528 kb on - strand at 504.528 kb on - strand at 504.609 kb on - strand at 504.616 kb on + strand at 504.702 kb on + strand at 504.702 kb on + strand at 504.703 kb on - strand at 504.703 kb on - strand at 504.703 kb on - strand at 504.810 kb on + strand, within Ac3H11_2270 at 504.930 kb on + strand, within Ac3H11_2270 at 504.930 kb on + strand, within Ac3H11_2270 at 504.930 kb on + strand, within Ac3H11_2270 at 504.930 kb on + strand, within Ac3H11_2270 at 504.930 kb on + strand, within Ac3H11_2270 at 504.930 kb on + strand, within Ac3H11_2270 at 504.930 kb on + strand, within Ac3H11_2270 at 504.930 kb on + strand, within Ac3H11_2270 at 504.931 kb on - strand, within Ac3H11_2270 at 504.931 kb on - strand, within Ac3H11_2270 at 504.931 kb on - strand, within Ac3H11_2270 at 505.161 kb on + strand, within Ac3H11_2270 at 505.161 kb on + strand, within Ac3H11_2270 at 505.161 kb on + strand, within Ac3H11_2270 at 505.161 kb on + strand, within Ac3H11_2270 at 505.161 kb on + strand, within Ac3H11_2270 at 505.161 kb on + strand, within Ac3H11_2270 at 505.162 kb on - strand, within Ac3H11_2270 at 505.162 kb on - strand, within Ac3H11_2270 at 505.162 kb on - strand, within Ac3H11_2270 at 505.162 kb on - strand, within Ac3H11_2270 at 505.391 kb on + strand, within Ac3H11_2270 at 505.437 kb on + strand, within Ac3H11_2270 at 505.437 kb on + strand, within Ac3H11_2270 at 505.437 kb on + strand, within Ac3H11_2270 at 505.438 kb on - strand, within Ac3H11_2270 at 505.438 kb on - strand, within Ac3H11_2270 at 505.438 kb on - strand, within Ac3H11_2270 at 505.438 kb on - strand, within Ac3H11_2270 at 505.438 kb on - strand, within Ac3H11_2270 at 505.438 kb on - strand, within Ac3H11_2270 at 505.438 kb on - strand, within Ac3H11_2270 at 505.536 kb on + strand, within Ac3H11_2270 at 505.536 kb on + strand, within Ac3H11_2270 at 505.536 kb on + strand, within Ac3H11_2270 at 505.563 kb on + strand, within Ac3H11_2270 at 505.563 kb on + strand, within Ac3H11_2270 at 505.563 kb on + strand, within Ac3H11_2270 at 505.563 kb on + strand, within Ac3H11_2270 at 505.563 kb on + strand, within Ac3H11_2270 at 505.563 kb on + strand, within Ac3H11_2270 at 505.563 kb on + strand, within Ac3H11_2270 at 505.564 kb on - strand, within Ac3H11_2270 at 505.564 kb on - strand, within Ac3H11_2270 at 505.564 kb on - strand, within Ac3H11_2270 at 505.564 kb on - strand, within Ac3H11_2270 at 505.564 kb on - strand, within Ac3H11_2270
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 500,633 + Ac3H11_2267 0.77 +0.4 500,633 + Ac3H11_2267 0.77 -0.0 500,633 + Ac3H11_2267 0.77 -2.6 500,633 + Ac3H11_2267 0.77 +0.1 500,633 + Ac3H11_2267 0.77 +2.3 500,633 + Ac3H11_2267 0.77 -2.9 500,633 + Ac3H11_2267 0.77 -3.2 500,633 + Ac3H11_2267 0.77 +0.6 500,633 + Ac3H11_2267 0.77 -4.3 500,634 - Ac3H11_2267 0.77 +1.6 500,634 - Ac3H11_2267 0.77 -0.3 500,660 + Ac3H11_2267 0.85 +0.7 500,660 + Ac3H11_2267 0.85 +0.8 500,660 + Ac3H11_2267 0.85 -1.1 500,660 + Ac3H11_2267 0.85 -2.5 500,661 - Ac3H11_2267 0.85 -1.6 500,661 - Ac3H11_2267 0.85 -1.3 500,661 - Ac3H11_2267 0.85 -0.4 500,661 - Ac3H11_2267 0.85 -3.7 500,661 - Ac3H11_2267 0.85 -3.3 500,661 - Ac3H11_2267 0.85 -3.2 500,661 - Ac3H11_2267 0.85 -0.9 500,788 + -1.7 500,788 + -2.4 500,789 - +1.6 500,789 - +1.7 500,789 - -0.3 500,789 - +0.0 500,817 + -1.1 500,877 - -0.8 500,877 - +2.0 500,877 - -2.0 500,879 + -1.9 500,879 + +2.1 500,879 + +0.3 500,880 - -1.1 500,880 - +1.1 500,880 - +0.6 500,923 + -0.2 500,924 - +1.2 500,925 + -2.8 500,926 - -1.8 500,951 - -0.2 501,065 + +0.7 501,065 + +0.8 501,066 - -2.2 501,066 - +0.3 501,066 - -0.6 501,224 + Ac3H11_2268 0.39 -3.0 501,323 + Ac3H11_2268 0.59 +0.4 501,323 + Ac3H11_2268 0.59 -0.1 501,323 + Ac3H11_2268 0.59 -2.9 501,323 + Ac3H11_2268 0.59 -3.7 501,324 - Ac3H11_2268 0.59 -0.4 501,324 - Ac3H11_2268 0.59 +0.3 501,473 + +1.9 501,473 + +2.3 501,474 - +0.4 501,474 - -0.4 501,474 - +1.5 501,476 + +1.2 501,476 + +0.7 501,476 + -0.4 501,476 + +0.4 501,476 + -0.4 501,476 + -0.3 501,476 + -0.6 501,476 + -1.1 501,476 + -2.1 501,476 + -0.3 501,477 - +0.9 501,477 - -0.9 501,477 - -2.7 501,477 - -1.5 501,518 + -2.5 501,518 + +1.2 501,611 + -0.6 501,611 + -3.0 501,611 + +0.1 501,611 + +2.4 501,611 + +2.0 501,612 - -0.3 501,612 - -2.8 501,612 - -2.8 501,612 - -0.9 501,612 - +1.7 501,612 - -0.3 501,612 - +1.2 501,612 - -0.6 501,612 - -0.3 501,612 - -3.7 501,612 - -1.3 501,612 - -0.2 501,612 - +0.3 501,635 + +3.2 501,635 + -0.3 501,636 - -1.5 501,636 - -0.8 501,720 - +1.7 501,769 + -4.0 501,797 + -0.7 501,798 - +1.0 501,872 + Ac3H11_2269 0.10 +0.0 501,872 + Ac3H11_2269 0.10 -4.2 501,872 + Ac3H11_2269 0.10 -0.3 501,872 + Ac3H11_2269 0.10 -0.7 501,872 + Ac3H11_2269 0.10 -3.2 501,872 + Ac3H11_2269 0.10 -0.7 501,873 - Ac3H11_2269 0.10 -1.7 501,873 - Ac3H11_2269 0.10 +1.7 501,873 - Ac3H11_2269 0.10 -4.0 501,873 - Ac3H11_2269 0.10 -0.1 501,873 - Ac3H11_2269 0.10 -1.9 501,873 - Ac3H11_2269 0.10 +0.1 501,873 - Ac3H11_2269 0.10 +0.4 501,873 - Ac3H11_2269 0.10 -1.1 501,873 - Ac3H11_2269 0.10 +2.7 502,472 + Ac3H11_2269 0.30 +1.1 502,472 + Ac3H11_2269 0.30 +0.3 502,472 + Ac3H11_2269 0.30 +1.5 502,473 - Ac3H11_2269 0.30 +2.6 502,473 - Ac3H11_2269 0.30 +0.0 502,473 - Ac3H11_2269 0.30 +0.5 502,473 - Ac3H11_2269 0.30 +1.3 502,666 - Ac3H11_2269 0.36 -1.1 503,666 + Ac3H11_2269 0.69 -0.3 503,666 + Ac3H11_2269 0.69 +0.6 504,041 + Ac3H11_2269 0.81 -2.3 504,042 - Ac3H11_2269 0.81 -2.5 504,042 - Ac3H11_2269 0.81 +0.6 504,042 - Ac3H11_2269 0.81 -2.3 504,172 + Ac3H11_2269 0.86 +0.2 504,173 - Ac3H11_2269 0.86 -0.2 504,259 - Ac3H11_2269 0.88 -2.4 504,259 - Ac3H11_2269 0.88 -3.6 504,259 - Ac3H11_2269 0.88 +1.5 504,259 - Ac3H11_2269 0.88 -0.7 504,497 + +0.7 504,497 + -0.6 504,498 - +1.2 504,498 - +0.1 504,498 - -2.1 504,498 - +1.2 504,498 - +1.5 504,527 + -3.8 504,527 + +2.5 504,528 - +1.4 504,528 - -2.7 504,528 - -0.1 504,609 - +0.5 504,616 + -2.3 504,702 + +0.1 504,702 + +0.9 504,703 - +0.8 504,703 - +0.6 504,703 - -0.6 504,810 + Ac3H11_2270 0.18 +0.6 504,930 + Ac3H11_2270 0.28 +1.8 504,930 + Ac3H11_2270 0.28 +0.8 504,930 + Ac3H11_2270 0.28 +1.1 504,930 + Ac3H11_2270 0.28 -3.5 504,930 + Ac3H11_2270 0.28 +1.1 504,930 + Ac3H11_2270 0.28 +1.2 504,930 + Ac3H11_2270 0.28 +1.0 504,930 + Ac3H11_2270 0.28 -3.2 504,931 - Ac3H11_2270 0.28 +0.8 504,931 - Ac3H11_2270 0.28 -2.5 504,931 - Ac3H11_2270 0.28 -2.4 505,161 + Ac3H11_2270 0.48 +2.8 505,161 + Ac3H11_2270 0.48 -3.1 505,161 + Ac3H11_2270 0.48 -0.6 505,161 + Ac3H11_2270 0.48 +1.3 505,161 + Ac3H11_2270 0.48 -2.3 505,161 + Ac3H11_2270 0.48 +0.7 505,162 - Ac3H11_2270 0.48 +1.0 505,162 - Ac3H11_2270 0.48 -0.3 505,162 - Ac3H11_2270 0.48 +0.2 505,162 - Ac3H11_2270 0.48 -2.4 505,391 + Ac3H11_2270 0.67 +0.6 505,437 + Ac3H11_2270 0.71 +0.0 505,437 + Ac3H11_2270 0.71 -4.5 505,437 + Ac3H11_2270 0.71 +0.0 505,438 - Ac3H11_2270 0.71 -2.2 505,438 - Ac3H11_2270 0.71 +0.5 505,438 - Ac3H11_2270 0.71 -0.1 505,438 - Ac3H11_2270 0.71 -2.1 505,438 - Ac3H11_2270 0.71 -1.9 505,438 - Ac3H11_2270 0.71 +0.4 505,438 - Ac3H11_2270 0.71 -3.1 505,536 + Ac3H11_2270 0.80 +0.2 505,536 + Ac3H11_2270 0.80 -1.6 505,536 + Ac3H11_2270 0.80 +0.6 505,563 + Ac3H11_2270 0.82 -1.9 505,563 + Ac3H11_2270 0.82 +1.5 505,563 + Ac3H11_2270 0.82 +1.2 505,563 + Ac3H11_2270 0.82 +1.9 505,563 + Ac3H11_2270 0.82 -0.9 505,563 + Ac3H11_2270 0.82 -3.4 505,563 + Ac3H11_2270 0.82 -1.1 505,564 - Ac3H11_2270 0.82 -3.1 505,564 - Ac3H11_2270 0.82 -3.0 505,564 - Ac3H11_2270 0.82 -0.3 505,564 - Ac3H11_2270 0.82 +1.8 505,564 - Ac3H11_2270 0.82 +0.6
Or see this region's nucleotide sequence