Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2110

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2108 and Ac3H11_2109 overlap by 8 nucleotidesAc3H11_2109 and Ac3H11_2110 are separated by 5 nucleotidesAc3H11_2110 and Ac3H11_2111 are separated by 1 nucleotides Ac3H11_2108 - FIG094192: hypothetical protein, at 344,987 to 345,220 _2108 Ac3H11_2109 - Nitrate/nitrite response regulator protein, at 345,213 to 345,857 _2109 Ac3H11_2110 - Type I secretion system, membrane fusion protein LapC, at 345,863 to 347,278 _2110 Ac3H11_2111 - Type I secretion system ATPase, LssB family LapB, at 347,280 to 349,442 _2111 Position (kb) 345 346 347 348Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 344.906 kb on + strandat 344.906 kb on + strandat 344.906 kb on + strandat 344.906 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.951 kb on + strandat 344.952 kb on - strandat 344.952 kb on - strandat 344.952 kb on - strandat 344.952 kb on - strandat 344.952 kb on - strandat 344.952 kb on - strandat 345.020 kb on + strand, within Ac3H11_2108at 345.020 kb on + strand, within Ac3H11_2108at 345.032 kb on - strand, within Ac3H11_2108at 345.032 kb on - strand, within Ac3H11_2108at 345.032 kb on - strand, within Ac3H11_2108at 345.032 kb on - strand, within Ac3H11_2108at 345.101 kb on - strand, within Ac3H11_2108at 345.571 kb on + strand, within Ac3H11_2109at 345.572 kb on - strand, within Ac3H11_2109at 345.572 kb on - strand, within Ac3H11_2109at 345.697 kb on + strand, within Ac3H11_2109at 345.697 kb on + strand, within Ac3H11_2109at 345.697 kb on + strand, within Ac3H11_2109at 345.698 kb on - strand, within Ac3H11_2109at 345.698 kb on - strand, within Ac3H11_2109at 345.698 kb on - strand, within Ac3H11_2109at 345.753 kb on + strand, within Ac3H11_2109at 345.753 kb on + strand, within Ac3H11_2109at 345.753 kb on + strand, within Ac3H11_2109at 345.754 kb on - strand, within Ac3H11_2109at 345.754 kb on - strand, within Ac3H11_2109at 345.754 kb on - strand, within Ac3H11_2109at 345.754 kb on - strand, within Ac3H11_2109at 345.754 kb on - strand, within Ac3H11_2109at 345.915 kb on + strandat 345.915 kb on + strandat 345.916 kb on - strandat 346.026 kb on + strand, within Ac3H11_2110at 346.026 kb on + strand, within Ac3H11_2110at 346.027 kb on - strand, within Ac3H11_2110at 346.027 kb on - strand, within Ac3H11_2110at 346.027 kb on - strand, within Ac3H11_2110at 346.027 kb on - strand, within Ac3H11_2110at 346.098 kb on + strand, within Ac3H11_2110at 346.098 kb on + strand, within Ac3H11_2110at 346.098 kb on + strand, within Ac3H11_2110at 346.098 kb on + strand, within Ac3H11_2110at 346.098 kb on + strand, within Ac3H11_2110at 346.099 kb on - strand, within Ac3H11_2110at 346.114 kb on - strand, within Ac3H11_2110at 346.276 kb on + strand, within Ac3H11_2110at 346.277 kb on - strand, within Ac3H11_2110at 347.037 kb on + strand, within Ac3H11_2110at 347.725 kb on + strand, within Ac3H11_2111at 347.725 kb on + strand, within Ac3H11_2111at 347.725 kb on + strand, within Ac3H11_2111at 347.726 kb on - strand, within Ac3H11_2111at 347.726 kb on - strand, within Ac3H11_2111at 347.726 kb on - strand, within Ac3H11_2111at 347.726 kb on - strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.753 kb on - strand, within Ac3H11_2111at 347.837 kb on - strand, within Ac3H11_2111at 348.097 kb on + strand, within Ac3H11_2111at 348.098 kb on - strand, within Ac3H11_2111at 348.098 kb on - strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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344,906 + +1.2
344,906 + +1.4
344,906 + -3.8
344,906 + -1.8
344,951 + +1.4
344,951 + -3.4
344,951 + +0.6
344,951 + -1.0
344,951 + +0.4
344,951 + +1.1
344,951 + +0.1
344,951 + +1.1
344,952 - +2.4
344,952 - +0.3
344,952 - -2.0
344,952 - +0.8
344,952 - -2.2
344,952 - +0.7
345,020 + Ac3H11_2108 0.14 -0.8
345,020 + Ac3H11_2108 0.14 -3.9
345,032 - Ac3H11_2108 0.19 +0.3
345,032 - Ac3H11_2108 0.19 +0.5
345,032 - Ac3H11_2108 0.19 +0.5
345,032 - Ac3H11_2108 0.19 -3.6
345,101 - Ac3H11_2108 0.49 -0.4
345,571 + Ac3H11_2109 0.56 -1.4
345,572 - Ac3H11_2109 0.56 -0.4
345,572 - Ac3H11_2109 0.56 +0.2
345,697 + Ac3H11_2109 0.75 -0.9
345,697 + Ac3H11_2109 0.75 +1.0
345,697 + Ac3H11_2109 0.75 -3.2
345,698 - Ac3H11_2109 0.75 -2.9
345,698 - Ac3H11_2109 0.75 +0.4
345,698 - Ac3H11_2109 0.75 +1.7
345,753 + Ac3H11_2109 0.84 +0.7
345,753 + Ac3H11_2109 0.84 -3.0
345,753 + Ac3H11_2109 0.84 -1.2
345,754 - Ac3H11_2109 0.84 +0.0
345,754 - Ac3H11_2109 0.84 +1.8
345,754 - Ac3H11_2109 0.84 -0.5
345,754 - Ac3H11_2109 0.84 -0.3
345,754 - Ac3H11_2109 0.84 +0.1
345,915 + +1.0
345,915 + -1.3
345,916 - +2.5
346,026 + Ac3H11_2110 0.12 -0.3
346,026 + Ac3H11_2110 0.12 -1.0
346,027 - Ac3H11_2110 0.12 +1.3
346,027 - Ac3H11_2110 0.12 -1.6
346,027 - Ac3H11_2110 0.12 -1.9
346,027 - Ac3H11_2110 0.12 -4.4
346,098 + Ac3H11_2110 0.17 -0.2
346,098 + Ac3H11_2110 0.17 +0.3
346,098 + Ac3H11_2110 0.17 +2.7
346,098 + Ac3H11_2110 0.17 -2.6
346,098 + Ac3H11_2110 0.17 -1.3
346,099 - Ac3H11_2110 0.17 -3.3
346,114 - Ac3H11_2110 0.18 +1.5
346,276 + Ac3H11_2110 0.29 +1.0
346,277 - Ac3H11_2110 0.29 +0.8
347,037 + Ac3H11_2110 0.83 -0.9
347,725 + Ac3H11_2111 0.21 -0.7
347,725 + Ac3H11_2111 0.21 +1.6
347,725 + Ac3H11_2111 0.21 +1.4
347,726 - Ac3H11_2111 0.21 +2.2
347,726 - Ac3H11_2111 0.21 -1.6
347,726 - Ac3H11_2111 0.21 +1.4
347,726 - Ac3H11_2111 0.21 +1.2
347,752 + Ac3H11_2111 0.22 -0.2
347,752 + Ac3H11_2111 0.22 +2.0
347,752 + Ac3H11_2111 0.22 -0.3
347,752 + Ac3H11_2111 0.22 -0.5
347,752 + Ac3H11_2111 0.22 +0.8
347,752 + Ac3H11_2111 0.22 +0.3
347,752 + Ac3H11_2111 0.22 +0.7
347,753 - Ac3H11_2111 0.22 -2.1
347,837 - Ac3H11_2111 0.26 -1.1
348,097 + Ac3H11_2111 0.38 -2.3
348,098 - Ac3H11_2111 0.38 +0.4
348,098 - Ac3H11_2111 0.38 +1.4
348,205 + Ac3H11_2111 0.43 +1.6
348,205 + Ac3H11_2111 0.43 -2.9
348,205 + Ac3H11_2111 0.43 -1.8
348,205 + Ac3H11_2111 0.43 +1.1
348,205 + Ac3H11_2111 0.43 -4.0
348,205 + Ac3H11_2111 0.43 +1.0
348,205 + Ac3H11_2111 0.43 +0.7
348,205 + Ac3H11_2111 0.43 -0.3
348,205 + Ac3H11_2111 0.43 +3.3
348,205 + Ac3H11_2111 0.43 -2.5
348,205 + Ac3H11_2111 0.43 -0.0
348,205 + Ac3H11_2111 0.43 +0.4
348,206 - Ac3H11_2111 0.43 -0.0
348,206 - Ac3H11_2111 0.43 -0.9
348,206 - Ac3H11_2111 0.43 +0.8
348,206 - Ac3H11_2111 0.43 -0.3
348,206 - Ac3H11_2111 0.43 -2.6
348,206 - Ac3H11_2111 0.43 +1.3
348,206 - Ac3H11_2111 0.43 +0.0
348,206 - Ac3H11_2111 0.43 -0.9
348,206 - Ac3H11_2111 0.43 -0.3

Or see this region's nucleotide sequence