Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_138 and Ac3H11_139 are separated by 17 nucleotides Ac3H11_139 and Ac3H11_140 are separated by 3 nucleotides Ac3H11_140 and Ac3H11_141 are separated by 188 nucleotides
Ac3H11_138 - Gluconolactonase, at 22,112 to 23,035
_138
Ac3H11_139 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 23,053 to 23,955
_139
Ac3H11_140 - Tricarboxylate transport protein TctC, at 23,959 to 24,915
_140
Ac3H11_141 - Tricarboxylate transport protein TctC, at 25,104 to 26,102
_141
Position (kb) 23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 23.075 kb on + strand at 23.075 kb on + strand at 23.075 kb on + strand at 23.076 kb on - strand at 23.076 kb on - strand at 23.270 kb on + strand, within Ac3H11_139 at 23.300 kb on + strand, within Ac3H11_139 at 23.300 kb on + strand, within Ac3H11_139 at 23.301 kb on - strand, within Ac3H11_139 at 23.301 kb on - strand, within Ac3H11_139 at 23.301 kb on - strand, within Ac3H11_139 at 23.301 kb on - strand, within Ac3H11_139 at 23.301 kb on - strand, within Ac3H11_139 at 23.301 kb on - strand, within Ac3H11_139 at 23.726 kb on + strand, within Ac3H11_139 at 23.727 kb on - strand, within Ac3H11_139 at 24.185 kb on + strand, within Ac3H11_140 at 24.185 kb on + strand, within Ac3H11_140 at 24.185 kb on + strand, within Ac3H11_140 at 24.381 kb on - strand, within Ac3H11_140 at 24.654 kb on - strand, within Ac3H11_140 at 24.654 kb on - strand, within Ac3H11_140 at 24.654 kb on - strand, within Ac3H11_140 at 24.665 kb on + strand, within Ac3H11_140 at 24.666 kb on - strand, within Ac3H11_140 at 24.666 kb on - strand, within Ac3H11_140 at 24.666 kb on - strand, within Ac3H11_140 at 24.816 kb on - strand, within Ac3H11_140 at 24.926 kb on + strand at 24.926 kb on + strand at 24.926 kb on + strand at 24.926 kb on + strand at 24.927 kb on - strand at 24.927 kb on - strand at 24.927 kb on - strand at 24.931 kb on - strand at 24.956 kb on + strand at 24.957 kb on - strand at 24.957 kb on - strand at 24.957 kb on - strand at 25.142 kb on + strand at 25.142 kb on + strand at 25.142 kb on + strand at 25.142 kb on + strand at 25.143 kb on - strand at 25.144 kb on + strand at 25.145 kb on - strand at 25.321 kb on + strand, within Ac3H11_141 at 25.322 kb on - strand, within Ac3H11_141 at 25.322 kb on - strand, within Ac3H11_141 at 25.339 kb on + strand, within Ac3H11_141 at 25.339 kb on + strand, within Ac3H11_141 at 25.525 kb on + strand, within Ac3H11_141 at 25.526 kb on - strand, within Ac3H11_141 at 25.651 kb on + strand, within Ac3H11_141 at 25.651 kb on + strand, within Ac3H11_141 at 25.651 kb on + strand, within Ac3H11_141 at 25.651 kb on + strand, within Ac3H11_141 at 25.652 kb on - strand, within Ac3H11_141 at 25.652 kb on - strand, within Ac3H11_141 at 25.652 kb on - strand, within Ac3H11_141 at 25.652 kb on - strand, within Ac3H11_141 at 25.652 kb on - strand, within Ac3H11_141 at 25.713 kb on + strand, within Ac3H11_141 at 25.713 kb on + strand, within Ac3H11_141 at 25.714 kb on - strand, within Ac3H11_141 at 25.769 kb on - strand, within Ac3H11_141
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 23,075 + -0.3 23,075 + -0.2 23,075 + -1.3 23,076 - -0.0 23,076 - +1.8 23,270 + Ac3H11_139 0.24 -3.1 23,300 + Ac3H11_139 0.27 -2.0 23,300 + Ac3H11_139 0.27 +0.0 23,301 - Ac3H11_139 0.27 +1.4 23,301 - Ac3H11_139 0.27 -3.7 23,301 - Ac3H11_139 0.27 +1.8 23,301 - Ac3H11_139 0.27 -0.2 23,301 - Ac3H11_139 0.27 +1.4 23,301 - Ac3H11_139 0.27 -0.6 23,726 + Ac3H11_139 0.75 +1.4 23,727 - Ac3H11_139 0.75 +0.9 24,185 + Ac3H11_140 0.24 -3.0 24,185 + Ac3H11_140 0.24 +1.0 24,185 + Ac3H11_140 0.24 +0.5 24,381 - Ac3H11_140 0.44 +0.7 24,654 - Ac3H11_140 0.73 +0.2 24,654 - Ac3H11_140 0.73 +0.6 24,654 - Ac3H11_140 0.73 -1.1 24,665 + Ac3H11_140 0.74 +1.4 24,666 - Ac3H11_140 0.74 -2.8 24,666 - Ac3H11_140 0.74 -0.4 24,666 - Ac3H11_140 0.74 -3.3 24,816 - Ac3H11_140 0.90 -1.0 24,926 + +0.9 24,926 + -0.6 24,926 + +0.1 24,926 + -0.6 24,927 - -2.5 24,927 - +1.0 24,927 - -1.2 24,931 - +1.5 24,956 + -3.2 24,957 - -2.5 24,957 - -0.7 24,957 - -0.2 25,142 + -1.1 25,142 + -1.4 25,142 + -1.3 25,142 + -0.2 25,143 - +0.6 25,144 + +1.1 25,145 - +0.8 25,321 + Ac3H11_141 0.22 -2.8 25,322 - Ac3H11_141 0.22 +0.3 25,322 - Ac3H11_141 0.22 -0.6 25,339 + Ac3H11_141 0.24 +1.5 25,339 + Ac3H11_141 0.24 -0.8 25,525 + Ac3H11_141 0.42 -1.8 25,526 - Ac3H11_141 0.42 +1.3 25,651 + Ac3H11_141 0.55 +1.2 25,651 + Ac3H11_141 0.55 -2.9 25,651 + Ac3H11_141 0.55 +0.5 25,651 + Ac3H11_141 0.55 +3.9 25,652 - Ac3H11_141 0.55 -3.3 25,652 - Ac3H11_141 0.55 -3.0 25,652 - Ac3H11_141 0.55 -1.5 25,652 - Ac3H11_141 0.55 -2.4 25,652 - Ac3H11_141 0.55 +1.0 25,713 + Ac3H11_141 0.61 +2.6 25,713 + Ac3H11_141 0.61 -3.1 25,714 - Ac3H11_141 0.61 +3.6 25,769 - Ac3H11_141 0.67 -1.6
Or see this region's nucleotide sequence