Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1223 and Ac3H11_1224 are separated by 18 nucleotides Ac3H11_1224 and Ac3H11_1225 are separated by 15 nucleotides Ac3H11_1225 and Ac3H11_1226 are separated by 36 nucleotides
Ac3H11_1223 - FIG002994: Putative transcriptional regulator, at 41,594 to 42,049
_1223
Ac3H11_1224 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 42,068 to 42,973
_1224
Ac3H11_1225 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 42,989 to 43,888
_1225
Ac3H11_1226 - Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25), at 43,925 to 44,836
_1226
Position (kb) 42
43
44 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 42.122 kb on + strand at 42.123 kb on - strand at 42.171 kb on + strand, within Ac3H11_1224 at 42.172 kb on - strand, within Ac3H11_1224 at 42.192 kb on + strand, within Ac3H11_1224 at 42.232 kb on - strand, within Ac3H11_1224 at 42.254 kb on + strand, within Ac3H11_1224 at 42.381 kb on + strand, within Ac3H11_1224 at 42.381 kb on + strand, within Ac3H11_1224 at 42.382 kb on - strand, within Ac3H11_1224 at 42.382 kb on - strand, within Ac3H11_1224 at 42.444 kb on + strand, within Ac3H11_1224 at 42.444 kb on + strand, within Ac3H11_1224 at 42.445 kb on - strand, within Ac3H11_1224 at 42.445 kb on - strand, within Ac3H11_1224 at 42.578 kb on + strand, within Ac3H11_1224 at 42.578 kb on + strand, within Ac3H11_1224 at 42.579 kb on - strand, within Ac3H11_1224 at 42.717 kb on + strand, within Ac3H11_1224 at 42.717 kb on + strand, within Ac3H11_1224 at 43.315 kb on - strand, within Ac3H11_1225 at 43.315 kb on - strand, within Ac3H11_1225 at 43.353 kb on + strand, within Ac3H11_1225 at 43.353 kb on + strand, within Ac3H11_1225 at 43.353 kb on + strand, within Ac3H11_1225 at 43.354 kb on - strand, within Ac3H11_1225 at 43.354 kb on - strand, within Ac3H11_1225 at 43.354 kb on - strand, within Ac3H11_1225 at 43.438 kb on - strand, within Ac3H11_1225 at 43.471 kb on - strand, within Ac3H11_1225 at 43.710 kb on + strand, within Ac3H11_1225 at 44.103 kb on + strand, within Ac3H11_1226 at 44.103 kb on + strand, within Ac3H11_1226 at 44.103 kb on + strand, within Ac3H11_1226 at 44.103 kb on + strand, within Ac3H11_1226 at 44.104 kb on - strand, within Ac3H11_1226 at 44.104 kb on - strand, within Ac3H11_1226 at 44.256 kb on + strand, within Ac3H11_1226 at 44.257 kb on - strand, within Ac3H11_1226 at 44.568 kb on + strand, within Ac3H11_1226 at 44.568 kb on + strand, within Ac3H11_1226 at 44.569 kb on - strand, within Ac3H11_1226 at 44.569 kb on - strand, within Ac3H11_1226 at 44.589 kb on + strand, within Ac3H11_1226 at 44.590 kb on - strand, within Ac3H11_1226 at 44.671 kb on - strand, within Ac3H11_1226 at 44.776 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 42,122 + -3.2 42,123 - -4.0 42,171 + Ac3H11_1224 0.11 +0.9 42,172 - Ac3H11_1224 0.11 -3.1 42,192 + Ac3H11_1224 0.14 +1.1 42,232 - Ac3H11_1224 0.18 -0.7 42,254 + Ac3H11_1224 0.21 -2.0 42,381 + Ac3H11_1224 0.35 +0.6 42,381 + Ac3H11_1224 0.35 +1.2 42,382 - Ac3H11_1224 0.35 -0.5 42,382 - Ac3H11_1224 0.35 +1.2 42,444 + Ac3H11_1224 0.42 -0.2 42,444 + Ac3H11_1224 0.42 +1.8 42,445 - Ac3H11_1224 0.42 -0.6 42,445 - Ac3H11_1224 0.42 +0.6 42,578 + Ac3H11_1224 0.56 +1.2 42,578 + Ac3H11_1224 0.56 +0.2 42,579 - Ac3H11_1224 0.56 +1.4 42,717 + Ac3H11_1224 0.72 -2.3 42,717 + Ac3H11_1224 0.72 +0.6 43,315 - Ac3H11_1225 0.36 -4.4 43,315 - Ac3H11_1225 0.36 -2.8 43,353 + Ac3H11_1225 0.40 -3.5 43,353 + Ac3H11_1225 0.40 -3.1 43,353 + Ac3H11_1225 0.40 -3.4 43,354 - Ac3H11_1225 0.41 +0.3 43,354 - Ac3H11_1225 0.41 -0.2 43,354 - Ac3H11_1225 0.41 -1.8 43,438 - Ac3H11_1225 0.50 +1.3 43,471 - Ac3H11_1225 0.54 +0.4 43,710 + Ac3H11_1225 0.80 -1.6 44,103 + Ac3H11_1226 0.20 +1.2 44,103 + Ac3H11_1226 0.20 +0.6 44,103 + Ac3H11_1226 0.20 +0.5 44,103 + Ac3H11_1226 0.20 +1.6 44,104 - Ac3H11_1226 0.20 -2.4 44,104 - Ac3H11_1226 0.20 +1.5 44,256 + Ac3H11_1226 0.36 +0.4 44,257 - Ac3H11_1226 0.36 -2.6 44,568 + Ac3H11_1226 0.71 -1.4 44,568 + Ac3H11_1226 0.71 +0.7 44,569 - Ac3H11_1226 0.71 +1.4 44,569 - Ac3H11_1226 0.71 +2.5 44,589 + Ac3H11_1226 0.73 -0.4 44,590 - Ac3H11_1226 0.73 +0.1 44,671 - Ac3H11_1226 0.82 -0.5 44,776 + +1.2
Or see this region's nucleotide sequence