Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1118 and Ac3H11_1119 are separated by 138 nucleotides Ac3H11_1119 and Ac3H11_1120 are separated by 45 nucleotides Ac3H11_1120 and Ac3H11_1121 are separated by 11 nucleotides
Ac3H11_1118 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 61,178 to 61,750
_1118
Ac3H11_1119 - hypothetical protein, at 61,889 to 62,170
_1119
Ac3H11_1120 - Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF), at 62,216 to 63,916
_1120
Ac3H11_1121 - Ornithine cyclodeaminase (EC 4.3.1.12), at 63,928 to 64,941
_1121
Position (kb) 62
63
64 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 61.790 kb on + strand at 61.790 kb on + strand at 61.791 kb on - strand at 61.791 kb on - strand at 61.838 kb on + strand at 61.839 kb on - strand at 61.918 kb on + strand, within Ac3H11_1119 at 61.918 kb on + strand, within Ac3H11_1119 at 61.919 kb on - strand, within Ac3H11_1119 at 61.921 kb on + strand, within Ac3H11_1119 at 61.921 kb on + strand, within Ac3H11_1119 at 61.921 kb on + strand, within Ac3H11_1119 at 61.922 kb on - strand, within Ac3H11_1119 at 61.922 kb on - strand, within Ac3H11_1119 at 61.922 kb on - strand, within Ac3H11_1119 at 61.973 kb on + strand, within Ac3H11_1119 at 61.973 kb on + strand, within Ac3H11_1119 at 61.974 kb on - strand, within Ac3H11_1119 at 61.974 kb on - strand, within Ac3H11_1119 at 61.974 kb on - strand, within Ac3H11_1119 at 61.974 kb on - strand, within Ac3H11_1119 at 62.067 kb on - strand, within Ac3H11_1119 at 62.144 kb on + strand at 62.145 kb on - strand at 62.145 kb on - strand at 62.145 kb on - strand at 62.263 kb on - strand at 62.550 kb on + strand, within Ac3H11_1120 at 62.551 kb on - strand, within Ac3H11_1120 at 62.551 kb on - strand, within Ac3H11_1120 at 62.907 kb on + strand, within Ac3H11_1120 at 62.907 kb on + strand, within Ac3H11_1120 at 62.907 kb on + strand, within Ac3H11_1120 at 62.907 kb on + strand, within Ac3H11_1120 at 62.908 kb on - strand, within Ac3H11_1120 at 62.908 kb on - strand, within Ac3H11_1120 at 62.908 kb on - strand, within Ac3H11_1120 at 63.109 kb on - strand, within Ac3H11_1120 at 63.109 kb on - strand, within Ac3H11_1120 at 63.109 kb on - strand, within Ac3H11_1120 at 63.177 kb on + strand, within Ac3H11_1120 at 63.177 kb on + strand, within Ac3H11_1120 at 63.177 kb on + strand, within Ac3H11_1120 at 63.177 kb on + strand, within Ac3H11_1120 at 63.177 kb on + strand, within Ac3H11_1120 at 63.177 kb on + strand, within Ac3H11_1120 at 63.177 kb on + strand, within Ac3H11_1120 at 63.177 kb on + strand, within Ac3H11_1120 at 63.177 kb on + strand, within Ac3H11_1120 at 63.178 kb on - strand, within Ac3H11_1120 at 63.178 kb on - strand, within Ac3H11_1120 at 63.178 kb on - strand at 63.178 kb on - strand, within Ac3H11_1120 at 63.178 kb on - strand, within Ac3H11_1120 at 64.901 kb on + strand at 64.901 kb on + strand at 64.901 kb on + strand at 64.901 kb on + strand at 64.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 61,790 + -3.1 61,790 + -1.3 61,791 - -2.5 61,791 - -2.7 61,838 + +0.5 61,839 - -3.3 61,918 + Ac3H11_1119 0.10 -2.7 61,918 + Ac3H11_1119 0.10 -0.0 61,919 - Ac3H11_1119 0.11 +1.9 61,921 + Ac3H11_1119 0.11 -0.3 61,921 + Ac3H11_1119 0.11 -0.2 61,921 + Ac3H11_1119 0.11 +1.5 61,922 - Ac3H11_1119 0.12 -1.3 61,922 - Ac3H11_1119 0.12 -1.8 61,922 - Ac3H11_1119 0.12 +1.6 61,973 + Ac3H11_1119 0.30 +2.7 61,973 + Ac3H11_1119 0.30 -0.4 61,974 - Ac3H11_1119 0.30 +1.1 61,974 - Ac3H11_1119 0.30 +0.8 61,974 - Ac3H11_1119 0.30 -0.1 61,974 - Ac3H11_1119 0.30 -0.3 62,067 - Ac3H11_1119 0.63 -2.6 62,144 + +0.5 62,145 - -0.1 62,145 - -0.4 62,145 - +1.5 62,263 - +0.9 62,550 + Ac3H11_1120 0.20 -0.5 62,551 - Ac3H11_1120 0.20 +1.7 62,551 - Ac3H11_1120 0.20 +1.9 62,907 + Ac3H11_1120 0.41 -2.6 62,907 + Ac3H11_1120 0.41 -2.7 62,907 + Ac3H11_1120 0.41 +1.4 62,907 + Ac3H11_1120 0.41 +1.2 62,908 - Ac3H11_1120 0.41 +0.8 62,908 - Ac3H11_1120 0.41 -0.1 62,908 - Ac3H11_1120 0.41 +0.7 63,109 - Ac3H11_1120 0.52 -1.1 63,109 - Ac3H11_1120 0.52 +0.7 63,109 - Ac3H11_1120 0.52 +0.6 63,177 + Ac3H11_1120 0.56 -0.3 63,177 + Ac3H11_1120 0.56 +0.3 63,177 + Ac3H11_1120 0.56 +2.7 63,177 + Ac3H11_1120 0.56 +0.2 63,177 + Ac3H11_1120 0.56 -3.3 63,177 + Ac3H11_1120 0.56 +1.2 63,177 + Ac3H11_1120 0.56 -3.8 63,177 + Ac3H11_1120 0.56 +1.7 63,177 + Ac3H11_1120 0.56 -0.3 63,178 - Ac3H11_1120 0.57 +1.1 63,178 - Ac3H11_1120 0.57 -0.1 63,178 - +2.7 63,178 - Ac3H11_1120 0.57 -0.1 63,178 - Ac3H11_1120 0.57 +1.4 64,901 + +1.7 64,901 + -2.5 64,901 + -0.3 64,901 + +1.6 64,902 - +1.5
Or see this region's nucleotide sequence