Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_103

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_101 and Ac3H11_102 are separated by 34 nucleotidesAc3H11_102 and Ac3H11_103 are separated by 1 nucleotidesAc3H11_103 and Ac3H11_104 overlap by 1 nucleotidesAc3H11_104 and Ac3H11_105 overlap by 1 nucleotides Ac3H11_101 - Benzoate transport, extracellular ligand-binding receptor, at 104,825 to 105,994 _101 Ac3H11_102 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 106,029 to 106,910 _102 Ac3H11_103 - Benzoate transport, inner-membrane translocator precursor, at 106,912 to 107,961 _103 Ac3H11_104 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 107,961 to 108,710 _104 Ac3H11_105 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 108,710 to 109,414 _105 Position (kb) 106 107 108Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 106.029 kb on - strandat 106.048 kb on + strandat 106.049 kb on - strandat 106.167 kb on + strand, within Ac3H11_102at 106.167 kb on + strand, within Ac3H11_102at 106.174 kb on + strand, within Ac3H11_102at 106.182 kb on + strand, within Ac3H11_102at 106.182 kb on + strand, within Ac3H11_102at 106.182 kb on + strand, within Ac3H11_102at 106.182 kb on + strand, within Ac3H11_102at 106.183 kb on - strand, within Ac3H11_102at 106.183 kb on - strand, within Ac3H11_102at 106.458 kb on + strand, within Ac3H11_102at 106.557 kb on + strand, within Ac3H11_102at 106.557 kb on + strand, within Ac3H11_102at 106.606 kb on - strand, within Ac3H11_102at 106.671 kb on + strand, within Ac3H11_102at 106.672 kb on - strand, within Ac3H11_102at 106.809 kb on + strand, within Ac3H11_102at 106.810 kb on - strand, within Ac3H11_102at 106.810 kb on - strand, within Ac3H11_102at 107.077 kb on + strand, within Ac3H11_103at 107.197 kb on + strand, within Ac3H11_103at 107.197 kb on + strand, within Ac3H11_103at 107.197 kb on + strand, within Ac3H11_103at 107.198 kb on - strand, within Ac3H11_103at 107.198 kb on - strand, within Ac3H11_103at 107.198 kb on - strand, within Ac3H11_103at 107.198 kb on - strand, within Ac3H11_103at 107.323 kb on + strand, within Ac3H11_103at 107.324 kb on - strand, within Ac3H11_103at 107.374 kb on + strand, within Ac3H11_103at 107.375 kb on - strand, within Ac3H11_103at 107.518 kb on + strand, within Ac3H11_103at 107.608 kb on + strand, within Ac3H11_103at 107.609 kb on - strand, within Ac3H11_103at 107.763 kb on + strand, within Ac3H11_103at 107.764 kb on - strand, within Ac3H11_103at 107.776 kb on + strand, within Ac3H11_103at 107.776 kb on + strand, within Ac3H11_103at 107.927 kb on + strandat 108.121 kb on + strand, within Ac3H11_104at 108.121 kb on + strand, within Ac3H11_104at 108.121 kb on + strand, within Ac3H11_104at 108.121 kb on + strand, within Ac3H11_104at 108.121 kb on + strand, within Ac3H11_104at 108.122 kb on - strand, within Ac3H11_104at 108.122 kb on - strand, within Ac3H11_104at 108.372 kb on - strand, within Ac3H11_104at 108.372 kb on - strand, within Ac3H11_104at 108.691 kb on - strandat 108.768 kb on + strandat 108.768 kb on + strandat 108.769 kb on - strandat 108.827 kb on - strand, within Ac3H11_105at 108.904 kb on + strand, within Ac3H11_105at 108.904 kb on + strand, within Ac3H11_105at 108.905 kb on - strand, within Ac3H11_105at 108.905 kb on - strand, within Ac3H11_105

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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106,029 - -1.7
106,048 + +0.8
106,049 - +1.5
106,167 + Ac3H11_102 0.16 +1.5
106,167 + Ac3H11_102 0.16 +1.1
106,174 + Ac3H11_102 0.16 -2.0
106,182 + Ac3H11_102 0.17 -2.4
106,182 + Ac3H11_102 0.17 -0.9
106,182 + Ac3H11_102 0.17 -0.4
106,182 + Ac3H11_102 0.17 +1.3
106,183 - Ac3H11_102 0.17 +0.7
106,183 - Ac3H11_102 0.17 -1.3
106,458 + Ac3H11_102 0.49 -3.6
106,557 + Ac3H11_102 0.60 +0.3
106,557 + Ac3H11_102 0.60 +0.3
106,606 - Ac3H11_102 0.65 -0.4
106,671 + Ac3H11_102 0.73 +0.6
106,672 - Ac3H11_102 0.73 -0.4
106,809 + Ac3H11_102 0.88 -0.7
106,810 - Ac3H11_102 0.89 -2.4
106,810 - Ac3H11_102 0.89 +1.2
107,077 + Ac3H11_103 0.16 +0.4
107,197 + Ac3H11_103 0.27 -0.2
107,197 + Ac3H11_103 0.27 +1.1
107,197 + Ac3H11_103 0.27 +1.6
107,198 - Ac3H11_103 0.27 +0.1
107,198 - Ac3H11_103 0.27 -1.7
107,198 - Ac3H11_103 0.27 -1.0
107,198 - Ac3H11_103 0.27 -2.6
107,323 + Ac3H11_103 0.39 +0.1
107,324 - Ac3H11_103 0.39 -3.5
107,374 + Ac3H11_103 0.44 +0.9
107,375 - Ac3H11_103 0.44 +0.7
107,518 + Ac3H11_103 0.58 -0.3
107,608 + Ac3H11_103 0.66 -2.3
107,609 - Ac3H11_103 0.66 -2.1
107,763 + Ac3H11_103 0.81 +0.8
107,764 - Ac3H11_103 0.81 -1.2
107,776 + Ac3H11_103 0.82 -4.0
107,776 + Ac3H11_103 0.82 +0.8
107,927 + -2.6
108,121 + Ac3H11_104 0.21 -1.9
108,121 + Ac3H11_104 0.21 -1.1
108,121 + Ac3H11_104 0.21 -0.4
108,121 + Ac3H11_104 0.21 +0.7
108,121 + Ac3H11_104 0.21 +1.3
108,122 - Ac3H11_104 0.21 +0.4
108,122 - Ac3H11_104 0.21 +0.5
108,372 - Ac3H11_104 0.55 +0.8
108,372 - Ac3H11_104 0.55 +3.1
108,691 - +0.7
108,768 + -2.6
108,768 + +0.2
108,769 - +2.4
108,827 - Ac3H11_105 0.17 +1.4
108,904 + Ac3H11_105 0.28 +1.4
108,904 + Ac3H11_105 0.28 +0.8
108,905 - Ac3H11_105 0.28 -2.0
108,905 - Ac3H11_105 0.28 -0.6

Or see this region's nucleotide sequence