Experiment: 1-ethyl-3-methylimidazolium chloride 170 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27395 and AO353_27400 are separated by 331 nucleotides AO353_27400 and AO353_27405 are separated by 98 nucleotides AO353_27405 and AO353_27410 are separated by 28 nucleotides
AO353_27395: AO353_27395 - hypothetical protein, at 5,985,583 to 5,986,101
_27395
AO353_27400: AO353_27400 - hypothetical protein, at 5,986,433 to 5,986,666
_27400
AO353_27405: AO353_27405 - peptidase S24, at 5,986,765 to 5,987,412
_27405
AO353_27410: AO353_27410 - hypothetical protein, at 5,987,441 to 5,987,719
_27410
Position (kb) 5986
5987 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5985.481 kb on + strand at 5985.501 kb on + strand at 5985.501 kb on + strand at 5985.521 kb on + strand at 5985.566 kb on + strand at 5985.620 kb on + strand at 5985.620 kb on + strand at 5985.620 kb on + strand at 5985.620 kb on + strand at 5985.620 kb on + strand at 5985.620 kb on + strand at 5985.621 kb on - strand at 5985.621 kb on - strand at 5985.621 kb on - strand at 5985.668 kb on - strand, within AO353_27395 at 5985.764 kb on + strand, within AO353_27395 at 5985.764 kb on + strand, within AO353_27395 at 5985.765 kb on - strand, within AO353_27395 at 5985.765 kb on - strand, within AO353_27395 at 5985.780 kb on + strand, within AO353_27395 at 5985.809 kb on + strand, within AO353_27395 at 5985.809 kb on + strand, within AO353_27395 at 5985.809 kb on + strand, within AO353_27395 at 5985.810 kb on - strand, within AO353_27395 at 5985.810 kb on - strand, within AO353_27395 at 5985.810 kb on - strand, within AO353_27395 at 5985.810 kb on - strand, within AO353_27395 at 5985.810 kb on - strand, within AO353_27395 at 5985.810 kb on - strand, within AO353_27395 at 5985.939 kb on + strand, within AO353_27395 at 5985.939 kb on + strand, within AO353_27395 at 5985.939 kb on + strand, within AO353_27395 at 5985.940 kb on - strand, within AO353_27395 at 5985.940 kb on - strand, within AO353_27395 at 5985.940 kb on - strand, within AO353_27395 at 5985.940 kb on - strand, within AO353_27395 at 5986.013 kb on + strand, within AO353_27395 at 5986.116 kb on + strand at 5986.116 kb on + strand at 5986.116 kb on + strand at 5986.116 kb on + strand at 5986.116 kb on + strand at 5986.116 kb on + strand at 5986.150 kb on + strand at 5986.150 kb on + strand at 5986.150 kb on + strand at 5986.150 kb on + strand at 5986.151 kb on - strand at 5986.151 kb on - strand at 5986.151 kb on - strand at 5986.151 kb on - strand at 5986.151 kb on - strand at 5986.151 kb on - strand at 5986.189 kb on + strand at 5986.190 kb on - strand at 5986.353 kb on + strand at 5986.353 kb on + strand at 5986.434 kb on + strand at 5986.434 kb on + strand at 5986.434 kb on + strand at 5986.434 kb on + strand at 5986.584 kb on + strand, within AO353_27400 at 5986.584 kb on + strand, within AO353_27400 at 5986.584 kb on + strand, within AO353_27400 at 5986.584 kb on + strand, within AO353_27400 at 5986.584 kb on + strand, within AO353_27400 at 5986.621 kb on + strand, within AO353_27400 at 5986.621 kb on + strand, within AO353_27400 at 5986.673 kb on + strand at 5987.558 kb on - strand, within AO353_27410 at 5987.562 kb on - strand, within AO353_27410 at 5987.596 kb on - strand, within AO353_27410 at 5987.642 kb on + strand, within AO353_27410 at 5987.642 kb on + strand, within AO353_27410 at 5987.642 kb on + strand, within AO353_27410
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 170 mM remove 5,985,481 + -0.8 5,985,501 + +0.4 5,985,501 + -1.6 5,985,521 + +0.2 5,985,566 + +0.4 5,985,620 + -0.2 5,985,620 + -0.6 5,985,620 + -0.3 5,985,620 + -2.6 5,985,620 + -0.8 5,985,620 + +0.4 5,985,621 - +1.1 5,985,621 - +0.8 5,985,621 - +0.3 5,985,668 - AO353_27395 0.16 +0.4 5,985,764 + AO353_27395 0.35 -0.2 5,985,764 + AO353_27395 0.35 +0.2 5,985,765 - AO353_27395 0.35 -0.1 5,985,765 - AO353_27395 0.35 +0.1 5,985,780 + AO353_27395 0.38 -2.2 5,985,809 + AO353_27395 0.44 +0.4 5,985,809 + AO353_27395 0.44 +1.2 5,985,809 + AO353_27395 0.44 -1.2 5,985,810 - AO353_27395 0.44 -0.6 5,985,810 - AO353_27395 0.44 +2.3 5,985,810 - AO353_27395 0.44 +1.4 5,985,810 - AO353_27395 0.44 -0.4 5,985,810 - AO353_27395 0.44 +0.2 5,985,810 - AO353_27395 0.44 +0.2 5,985,939 + AO353_27395 0.69 -1.6 5,985,939 + AO353_27395 0.69 +0.9 5,985,939 + AO353_27395 0.69 -0.9 5,985,940 - AO353_27395 0.69 -0.5 5,985,940 - AO353_27395 0.69 -0.6 5,985,940 - AO353_27395 0.69 -0.7 5,985,940 - AO353_27395 0.69 +0.4 5,986,013 + AO353_27395 0.83 -1.2 5,986,116 + -1.7 5,986,116 + -0.0 5,986,116 + +0.2 5,986,116 + -0.4 5,986,116 + +0.4 5,986,116 + -0.2 5,986,150 + +1.1 5,986,150 + +0.6 5,986,150 + +0.5 5,986,150 + -0.4 5,986,151 - +1.0 5,986,151 - +0.2 5,986,151 - -0.8 5,986,151 - +0.4 5,986,151 - -1.4 5,986,151 - -0.1 5,986,189 + -1.6 5,986,190 - +0.8 5,986,353 + +1.0 5,986,353 + +0.2 5,986,434 + -1.2 5,986,434 + -0.2 5,986,434 + +0.4 5,986,434 + +0.2 5,986,584 + AO353_27400 0.65 -0.6 5,986,584 + AO353_27400 0.65 -2.3 5,986,584 + AO353_27400 0.65 -1.6 5,986,584 + AO353_27400 0.65 +0.3 5,986,584 + AO353_27400 0.65 -1.2 5,986,621 + AO353_27400 0.80 -0.9 5,986,621 + AO353_27400 0.80 +0.9 5,986,673 + -0.2 5,987,558 - AO353_27410 0.42 +0.7 5,987,562 - AO353_27410 0.43 -1.2 5,987,596 - AO353_27410 0.56 -0.3 5,987,642 + AO353_27410 0.72 -0.9 5,987,642 + AO353_27410 0.72 -0.3 5,987,642 + AO353_27410 0.72 +0.5
Or see this region's nucleotide sequence