Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00845

Experiment: 1-ethyl-3-methylimidazolium chloride 170 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00835 and AO353_00840 are separated by 2 nucleotidesAO353_00840 and AO353_00845 are separated by 63 nucleotidesAO353_00845 and AO353_00850 are separated by 26 nucleotidesAO353_00850 and AO353_00855 are separated by 84 nucleotides AO353_00835: AO353_00835 - transporter, at 190,909 to 191,733 _00835 AO353_00840: AO353_00840 - CrfX protein, at 191,736 to 191,981 _00840 AO353_00845: AO353_00845 - CmaX protein, at 192,045 to 193,040 _00845 AO353_00850: AO353_00850 - ribonuclease activity regulator protein RraA, at 193,067 to 193,558 _00850 AO353_00855: AO353_00855 - Rieske iron-sulfur protein, at 193,643 to 193,942 _00855 Position (kb) 192 193 194Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 191.057 kb on + strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.220 kb on + strand, within AO353_00835at 191.221 kb on - strand, within AO353_00835at 191.221 kb on - strand, within AO353_00835at 191.221 kb on - strand, within AO353_00835at 191.332 kb on + strand, within AO353_00835at 191.332 kb on + strand, within AO353_00835at 191.333 kb on - strand, within AO353_00835at 191.366 kb on - strand, within AO353_00835at 191.366 kb on - strand, within AO353_00835at 191.366 kb on - strand, within AO353_00835at 191.375 kb on - strand, within AO353_00835at 191.378 kb on + strand, within AO353_00835at 191.378 kb on + strand, within AO353_00835at 191.379 kb on - strand, within AO353_00835at 191.379 kb on - strand, within AO353_00835at 191.379 kb on - strand, within AO353_00835at 191.469 kb on - strand, within AO353_00835at 191.490 kb on + strand, within AO353_00835at 191.635 kb on + strand, within AO353_00835at 191.636 kb on - strand, within AO353_00835at 191.771 kb on + strand, within AO353_00840at 191.982 kb on - strandat 191.982 kb on - strandat 191.982 kb on - strandat 191.998 kb on - strandat 191.998 kb on - strandat 192.048 kb on + strandat 192.049 kb on - strandat 192.049 kb on - strandat 192.162 kb on + strand, within AO353_00845at 192.162 kb on + strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.164 kb on + strand, within AO353_00845at 192.226 kb on + strand, within AO353_00845at 192.320 kb on - strand, within AO353_00845at 192.353 kb on - strand, within AO353_00845at 192.489 kb on - strand, within AO353_00845at 192.489 kb on - strand, within AO353_00845at 192.490 kb on + strand, within AO353_00845at 192.491 kb on - strand, within AO353_00845at 192.491 kb on - strand, within AO353_00845at 192.566 kb on + strand, within AO353_00845at 192.567 kb on - strand, within AO353_00845at 192.567 kb on - strand, within AO353_00845at 192.577 kb on + strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.587 kb on + strand, within AO353_00845at 192.588 kb on - strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.866 kb on + strand, within AO353_00845at 192.867 kb on - strand, within AO353_00845at 192.867 kb on - strand, within AO353_00845at 192.984 kb on - strandat 193.069 kb on - strandat 193.122 kb on + strand, within AO353_00850at 193.122 kb on + strand, within AO353_00850at 193.123 kb on - strand, within AO353_00850at 193.123 kb on - strand, within AO353_00850at 193.123 kb on - strand, within AO353_00850at 193.128 kb on + strand, within AO353_00850at 193.128 kb on + strand, within AO353_00850at 193.129 kb on - strand, within AO353_00850at 193.129 kb on - strand, within AO353_00850at 193.129 kb on - strand, within AO353_00850at 193.129 kb on - strand, within AO353_00850at 193.278 kb on + strand, within AO353_00850at 193.278 kb on + strand, within AO353_00850at 193.278 kb on + strand, within AO353_00850at 193.279 kb on - strand, within AO353_00850at 193.279 kb on - strand, within AO353_00850at 193.282 kb on + strand, within AO353_00850at 193.543 kb on + strandat 193.543 kb on + strandat 193.544 kb on - strandat 193.544 kb on - strandat 193.548 kb on + strandat 193.548 kb on + strandat 193.548 kb on + strandat 193.548 kb on + strandat 193.548 kb on + strandat 193.549 kb on - strandat 193.549 kb on - strandat 193.549 kb on - strandat 193.549 kb on - strandat 193.549 kb on - strandat 193.572 kb on + strandat 193.573 kb on - strandat 193.631 kb on + strandat 193.631 kb on + strandat 193.632 kb on - strandat 193.674 kb on + strand, within AO353_00855at 193.674 kb on + strand, within AO353_00855at 193.674 kb on + strand, within AO353_00855at 193.674 kb on + strand, within AO353_00855at 193.675 kb on - strand, within AO353_00855at 193.675 kb on - strand, within AO353_00855at 193.675 kb on - strand, within AO353_00855at 193.675 kb on - strand, within AO353_00855at 193.690 kb on + strand, within AO353_00855at 193.690 kb on + strand, within AO353_00855at 193.690 kb on + strand, within AO353_00855at 193.690 kb on + strand, within AO353_00855at 193.691 kb on - strand, within AO353_00855at 193.715 kb on + strand, within AO353_00855at 193.771 kb on + strand, within AO353_00855at 193.772 kb on - strand, within AO353_00855at 193.772 kb on - strand, within AO353_00855at 193.772 kb on - strand, within AO353_00855at 193.826 kb on + strand, within AO353_00855at 193.826 kb on + strand, within AO353_00855at 193.827 kb on - strand, within AO353_00855at 193.827 kb on - strand, within AO353_00855at 193.827 kb on - strand, within AO353_00855at 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.942 kb on + strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.943 kb on - strandat 193.990 kb on + strandat 193.990 kb on + strandat 194.040 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 170 mM
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191,057 + AO353_00835 0.18 -2.2
191,058 - AO353_00835 0.18 -0.6
191,058 - AO353_00835 0.18 -0.8
191,058 - AO353_00835 0.18 +0.8
191,058 - AO353_00835 0.18 +0.0
191,073 - AO353_00835 0.20 -1.7
191,073 - AO353_00835 0.20 -2.2
191,073 - AO353_00835 0.20 -0.7
191,073 - AO353_00835 0.20 +0.7
191,220 + AO353_00835 0.38 -1.4
191,221 - AO353_00835 0.38 +0.3
191,221 - AO353_00835 0.38 -2.2
191,221 - AO353_00835 0.38 -0.4
191,332 + AO353_00835 0.51 -2.2
191,332 + AO353_00835 0.51 +1.0
191,333 - AO353_00835 0.51 -2.2
191,366 - AO353_00835 0.55 -2.4
191,366 - AO353_00835 0.55 -2.6
191,366 - AO353_00835 0.55 -0.7
191,375 - AO353_00835 0.56 +0.6
191,378 + AO353_00835 0.57 -0.4
191,378 + AO353_00835 0.57 -2.7
191,379 - AO353_00835 0.57 -0.2
191,379 - AO353_00835 0.57 -0.1
191,379 - AO353_00835 0.57 -0.7
191,469 - AO353_00835 0.68 -0.6
191,490 + AO353_00835 0.70 -1.7
191,635 + AO353_00835 0.88 +1.0
191,636 - AO353_00835 0.88 -1.9
191,771 + AO353_00840 0.14 -0.5
191,982 - -0.1
191,982 - +1.6
191,982 - -0.4
191,998 - -1.2
191,998 - +0.8
192,048 + -0.4
192,049 - -0.3
192,049 - +0.2
192,162 + AO353_00845 0.12 -0.4
192,162 + AO353_00845 0.12 -1.6
192,163 - AO353_00845 0.12 +0.3
192,163 - AO353_00845 0.12 +0.3
192,163 - AO353_00845 0.12 -0.8
192,163 - AO353_00845 0.12 +0.6
192,163 - AO353_00845 0.12 -1.7
192,164 + AO353_00845 0.12 -1.1
192,226 + AO353_00845 0.18 -1.4
192,320 - AO353_00845 0.28 -1.7
192,353 - AO353_00845 0.31 -0.4
192,489 - AO353_00845 0.45 +0.0
192,489 - AO353_00845 0.45 -1.0
192,490 + AO353_00845 0.45 -2.2
192,491 - AO353_00845 0.45 +0.6
192,491 - AO353_00845 0.45 +1.2
192,566 + AO353_00845 0.52 -1.4
192,567 - AO353_00845 0.52 -0.5
192,567 - AO353_00845 0.52 -1.0
192,577 + AO353_00845 0.53 -1.0
192,578 - AO353_00845 0.54 +1.0
192,578 - AO353_00845 0.54 +1.3
192,578 - AO353_00845 0.54 -1.4
192,578 - AO353_00845 0.54 -0.4
192,587 + AO353_00845 0.54 -1.0
192,588 - AO353_00845 0.55 -1.2
192,589 + AO353_00845 0.55 -0.7
192,589 + AO353_00845 0.55 -2.7
192,589 + AO353_00845 0.55 -0.8
192,589 + AO353_00845 0.55 -1.8
192,589 + AO353_00845 0.55 +0.0
192,590 - AO353_00845 0.55 -2.7
192,590 - AO353_00845 0.55 +0.8
192,590 - AO353_00845 0.55 +2.0
192,590 - AO353_00845 0.55 -1.2
192,590 - AO353_00845 0.55 +0.6
192,590 - AO353_00845 0.55 -2.1
192,673 - AO353_00845 0.63 -1.0
192,673 - AO353_00845 0.63 -0.3
192,673 - AO353_00845 0.63 +0.9
192,866 + AO353_00845 0.82 +0.0
192,867 - AO353_00845 0.83 -1.0
192,867 - AO353_00845 0.83 +0.3
192,984 - -2.7
193,069 - -0.4
193,122 + AO353_00850 0.11 +0.6
193,122 + AO353_00850 0.11 -2.2
193,123 - AO353_00850 0.11 +1.1
193,123 - AO353_00850 0.11 -0.2
193,123 - AO353_00850 0.11 -0.6
193,128 + AO353_00850 0.12 +0.6
193,128 + AO353_00850 0.12 -0.7
193,129 - AO353_00850 0.13 +1.2
193,129 - AO353_00850 0.13 +2.2
193,129 - AO353_00850 0.13 +1.6
193,129 - AO353_00850 0.13 -1.0
193,278 + AO353_00850 0.43 -0.1
193,278 + AO353_00850 0.43 -1.4
193,278 + AO353_00850 0.43 -0.4
193,279 - AO353_00850 0.43 +0.6
193,279 - AO353_00850 0.43 +0.3
193,282 + AO353_00850 0.44 -3.1
193,543 + +0.6
193,543 + -0.6
193,544 - +0.6
193,544 - +0.3
193,548 + +0.2
193,548 + +0.3
193,548 + -2.2
193,548 + -0.7
193,548 + -0.6
193,549 - -0.7
193,549 - -0.0
193,549 - -2.0
193,549 - +0.3
193,549 - +1.2
193,572 + +2.0
193,573 - -1.4
193,631 + +0.0
193,631 + -1.6
193,632 - -0.4
193,674 + AO353_00855 0.10 -1.4
193,674 + AO353_00855 0.10 -0.7
193,674 + AO353_00855 0.10 -0.8
193,674 + AO353_00855 0.10 -1.7
193,675 - AO353_00855 0.11 -1.4
193,675 - AO353_00855 0.11 +0.8
193,675 - AO353_00855 0.11 +0.8
193,675 - AO353_00855 0.11 -0.8
193,690 + AO353_00855 0.16 +1.3
193,690 + AO353_00855 0.16 +0.1
193,690 + AO353_00855 0.16 -3.1
193,690 + AO353_00855 0.16 +0.3
193,691 - AO353_00855 0.16 -1.0
193,715 + AO353_00855 0.24 -0.4
193,771 + AO353_00855 0.43 -1.2
193,772 - AO353_00855 0.43 -0.2
193,772 - AO353_00855 0.43 +0.8
193,772 - AO353_00855 0.43 -1.2
193,826 + AO353_00855 0.61 -1.7
193,826 + AO353_00855 0.61 +0.6
193,827 - AO353_00855 0.61 -1.2
193,827 - AO353_00855 0.61 +0.3
193,827 - AO353_00855 0.61 +0.4
193,942 + -1.4
193,942 + -0.3
193,942 + -0.6
193,942 + -1.0
193,942 + -0.7
193,942 + -1.1
193,942 + -0.7
193,942 + -0.2
193,943 - -0.7
193,943 - -1.0
193,943 - +0.9
193,943 - +0.1
193,943 - +0.3
193,943 - -0.9
193,943 - -1.2
193,943 - -0.2
193,943 - -1.0
193,943 - -0.1
193,943 - -0.6
193,943 - +0.5
193,990 + +0.1
193,990 + +2.2
194,040 + +0.4

Or see this region's nucleotide sequence