Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1654 and Synpcc7942_1655 are separated by 27 nucleotides Synpcc7942_1655 and katG are separated by 89 nucleotides katG and Synpcc7942_1657 are separated by 371 nucleotides Synpcc7942_1657 and Synpcc7942_1658 are separated by 113 nucleotides
Synpcc7942_1654: Synpcc7942_1654 - hypothetical protein, at 1,724,849 to 1,725,232
_1654
Synpcc7942_1655: Synpcc7942_1655 - hypothetical protein, at 1,725,260 to 1,725,829
_1655
Synpcc7942_1656: katG - catalase/peroxidase HPI, at 1,725,919 to 1,728,081
katG
Synpcc7942_1657: Synpcc7942_1657 - hypothetical protein, at 1,728,453 to 1,728,674
_1657
Synpcc7942_1658: Synpcc7942_1658 - hypothetical protein, at 1,728,788 to 1,729,246
_1658
Position (kb) 1725
1726
1727
1728
1729 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1724.921 kb on + strand, within Synpcc7942_1654 at 1724.929 kb on - strand, within Synpcc7942_1654 at 1724.929 kb on - strand, within Synpcc7942_1654 at 1724.933 kb on + strand, within Synpcc7942_1654 at 1724.955 kb on - strand, within Synpcc7942_1654 at 1724.972 kb on + strand, within Synpcc7942_1654 at 1724.999 kb on + strand, within Synpcc7942_1654 at 1725.006 kb on + strand, within Synpcc7942_1654 at 1725.072 kb on - strand, within Synpcc7942_1654 at 1725.121 kb on + strand, within Synpcc7942_1654 at 1725.129 kb on - strand, within Synpcc7942_1654 at 1725.135 kb on + strand, within Synpcc7942_1654 at 1725.143 kb on - strand, within Synpcc7942_1654 at 1725.162 kb on + strand, within Synpcc7942_1654 at 1725.256 kb on - strand at 1725.279 kb on + strand at 1725.321 kb on - strand, within Synpcc7942_1655 at 1725.502 kb on + strand, within Synpcc7942_1655 at 1725.510 kb on - strand, within Synpcc7942_1655 at 1725.564 kb on - strand, within Synpcc7942_1655 at 1725.613 kb on + strand, within Synpcc7942_1655 at 1725.743 kb on + strand at 1725.803 kb on + strand at 1725.911 kb on + strand at 1725.922 kb on + strand at 1725.922 kb on + strand at 1725.946 kb on + strand at 1725.963 kb on - strand at 1725.963 kb on - strand at 1726.014 kb on + strand at 1726.014 kb on + strand at 1726.014 kb on + strand at 1726.022 kb on - strand at 1726.022 kb on - strand at 1726.022 kb on - strand at 1726.022 kb on - strand at 1726.022 kb on - strand at 1726.022 kb on - strand at 1726.022 kb on - strand at 1726.033 kb on - strand at 1726.116 kb on + strand at 1726.198 kb on + strand, within katG at 1726.199 kb on + strand, within katG at 1726.208 kb on - strand, within katG at 1726.213 kb on + strand, within katG at 1726.270 kb on + strand, within katG at 1726.279 kb on + strand, within katG at 1726.280 kb on + strand, within katG at 1726.287 kb on - strand, within katG at 1726.328 kb on + strand, within katG at 1726.336 kb on + strand, within katG at 1726.336 kb on + strand, within katG at 1726.336 kb on + strand, within katG at 1726.354 kb on + strand, within katG at 1726.383 kb on + strand, within katG at 1726.390 kb on + strand, within katG at 1726.391 kb on - strand, within katG at 1726.402 kb on + strand, within katG at 1726.412 kb on + strand, within katG at 1726.423 kb on + strand, within katG at 1726.423 kb on + strand, within katG at 1726.424 kb on + strand, within katG at 1726.431 kb on - strand, within katG at 1726.431 kb on - strand, within katG at 1726.474 kb on - strand, within katG at 1726.483 kb on - strand, within katG at 1726.483 kb on - strand, within katG at 1726.488 kb on - strand, within katG at 1726.498 kb on + strand, within katG at 1726.527 kb on + strand, within katG at 1726.591 kb on - strand, within katG at 1726.631 kb on + strand at 1726.640 kb on - strand, within katG at 1726.675 kb on - strand, within katG at 1726.676 kb on - strand, within katG at 1726.678 kb on + strand, within katG at 1726.678 kb on + strand, within katG at 1726.678 kb on + strand, within katG at 1726.678 kb on + strand, within katG at 1726.678 kb on + strand, within katG at 1726.678 kb on + strand, within katG at 1726.678 kb on + strand, within katG at 1726.678 kb on + strand, within katG at 1726.678 kb on + strand, within katG at 1726.678 kb on + strand, within katG at 1726.678 kb on + strand, within katG at 1726.680 kb on + strand, within katG at 1726.686 kb on - strand, within katG at 1726.686 kb on - strand, within katG at 1726.686 kb on - strand, within katG at 1726.686 kb on - strand, within katG at 1726.686 kb on - strand, within katG at 1726.686 kb on - strand, within katG at 1726.686 kb on - strand, within katG at 1726.688 kb on + strand, within katG at 1726.688 kb on + strand, within katG at 1726.688 kb on + strand, within katG at 1726.693 kb on - strand, within katG at 1726.696 kb on - strand, within katG at 1726.696 kb on - strand, within katG at 1726.701 kb on + strand, within katG at 1726.703 kb on + strand, within katG at 1726.706 kb on - strand, within katG at 1726.711 kb on - strand, within katG at 1726.711 kb on - strand at 1726.715 kb on - strand, within katG at 1726.851 kb on + strand, within katG at 1726.859 kb on - strand, within katG at 1726.862 kb on + strand, within katG at 1726.862 kb on + strand, within katG at 1726.870 kb on - strand, within katG at 1726.881 kb on + strand at 1726.889 kb on + strand, within katG at 1726.932 kb on + strand, within katG at 1726.941 kb on - strand, within katG at 1727.057 kb on - strand, within katG at 1727.084 kb on - strand, within katG at 1727.087 kb on + strand, within katG at 1727.097 kb on - strand, within katG at 1727.118 kb on - strand, within katG at 1727.124 kb on - strand, within katG at 1727.126 kb on + strand, within katG at 1727.127 kb on - strand, within katG at 1727.128 kb on - strand, within katG at 1727.138 kb on + strand, within katG at 1727.138 kb on + strand, within katG at 1727.138 kb on + strand, within katG at 1727.147 kb on + strand, within katG at 1727.147 kb on + strand, within katG at 1727.155 kb on - strand, within katG at 1727.158 kb on + strand, within katG at 1727.161 kb on + strand, within katG at 1727.175 kb on + strand, within katG at 1727.178 kb on - strand, within katG at 1727.181 kb on - strand, within katG at 1727.188 kb on - strand, within katG at 1727.201 kb on + strand, within katG at 1727.234 kb on - strand, within katG at 1727.254 kb on - strand, within katG at 1727.291 kb on - strand, within katG at 1727.291 kb on - strand, within katG at 1727.298 kb on - strand, within katG at 1727.301 kb on - strand, within katG at 1727.343 kb on + strand, within katG at 1727.348 kb on + strand, within katG at 1727.350 kb on + strand, within katG at 1727.372 kb on + strand, within katG at 1727.372 kb on + strand, within katG at 1727.375 kb on - strand, within katG at 1727.390 kb on - strand, within katG at 1727.390 kb on - strand, within katG at 1727.421 kb on - strand, within katG at 1727.422 kb on - strand, within katG at 1727.422 kb on - strand, within katG at 1727.422 kb on - strand, within katG at 1727.422 kb on - strand, within katG at 1727.422 kb on - strand, within katG at 1727.468 kb on + strand, within katG at 1727.476 kb on - strand, within katG at 1727.476 kb on - strand, within katG at 1727.476 kb on - strand, within katG at 1727.482 kb on + strand, within katG at 1727.507 kb on - strand, within katG at 1727.625 kb on - strand, within katG at 1727.695 kb on + strand at 1727.735 kb on + strand, within katG at 1727.767 kb on + strand, within katG at 1727.823 kb on - strand, within katG at 1727.895 kb on + strand at 1728.046 kb on + strand at 1728.206 kb on - strand at 1728.243 kb on - strand at 1728.245 kb on + strand at 1728.250 kb on - strand at 1728.281 kb on - strand at 1728.378 kb on + strand at 1728.401 kb on - strand at 1728.405 kb on + strand at 1728.408 kb on - strand at 1728.410 kb on + strand at 1728.421 kb on + strand at 1728.422 kb on + strand at 1728.422 kb on + strand at 1728.422 kb on + strand at 1728.512 kb on + strand, within Synpcc7942_1657 at 1728.515 kb on + strand, within Synpcc7942_1657 at 1728.535 kb on - strand, within Synpcc7942_1657 at 1728.548 kb on + strand, within Synpcc7942_1657 at 1728.569 kb on - strand, within Synpcc7942_1657 at 1728.569 kb on - strand, within Synpcc7942_1657 at 1728.643 kb on + strand, within Synpcc7942_1657 at 1728.643 kb on + strand, within Synpcc7942_1657 at 1728.648 kb on + strand, within Synpcc7942_1657 at 1728.661 kb on - strand at 1728.715 kb on + strand at 1728.733 kb on - strand at 1728.735 kb on + strand at 1728.735 kb on + strand at 1728.743 kb on - strand at 1728.743 kb on - strand at 1728.751 kb on - strand at 1728.785 kb on - strand at 1728.875 kb on + strand, within Synpcc7942_1658 at 1728.875 kb on + strand, within Synpcc7942_1658 at 1728.883 kb on - strand, within Synpcc7942_1658 at 1728.951 kb on - strand, within Synpcc7942_1658 at 1728.951 kb on - strand at 1728.955 kb on + strand, within Synpcc7942_1658 at 1728.965 kb on + strand, within Synpcc7942_1658 at 1728.982 kb on + strand, within Synpcc7942_1658 at 1728.999 kb on + strand, within Synpcc7942_1658 at 1729.002 kb on - strand, within Synpcc7942_1658 at 1729.007 kb on - strand, within Synpcc7942_1658 at 1729.018 kb on - strand, within Synpcc7942_1658 at 1729.030 kb on - strand, within Synpcc7942_1658 at 1729.034 kb on + strand, within Synpcc7942_1658 at 1729.034 kb on + strand, within Synpcc7942_1658 at 1729.045 kb on + strand, within Synpcc7942_1658 at 1729.045 kb on + strand, within Synpcc7942_1658 at 1729.045 kb on + strand, within Synpcc7942_1658 at 1729.045 kb on + strand, within Synpcc7942_1658
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 1,724,921 + Synpcc7942_1654 0.19 +1.9 1,724,929 - Synpcc7942_1654 0.21 +1.0 1,724,929 - Synpcc7942_1654 0.21 +0.1 1,724,933 + Synpcc7942_1654 0.22 -1.2 1,724,955 - Synpcc7942_1654 0.28 +0.1 1,724,972 + Synpcc7942_1654 0.32 +1.8 1,724,999 + Synpcc7942_1654 0.39 +1.2 1,725,006 + Synpcc7942_1654 0.41 -0.8 1,725,072 - Synpcc7942_1654 0.58 +0.1 1,725,121 + Synpcc7942_1654 0.71 +1.1 1,725,129 - Synpcc7942_1654 0.73 +1.5 1,725,135 + Synpcc7942_1654 0.74 +1.8 1,725,143 - Synpcc7942_1654 0.77 +0.6 1,725,162 + Synpcc7942_1654 0.82 -0.3 1,725,256 - +0.3 1,725,279 + +1.1 1,725,321 - Synpcc7942_1655 0.11 -3.1 1,725,502 + Synpcc7942_1655 0.42 +1.4 1,725,510 - Synpcc7942_1655 0.44 -0.4 1,725,564 - Synpcc7942_1655 0.53 -0.1 1,725,613 + Synpcc7942_1655 0.62 -0.4 1,725,743 + -1.4 1,725,803 + +0.5 1,725,911 + -0.2 1,725,922 + +0.1 1,725,922 + +0.9 1,725,946 + +1.1 1,725,963 - +0.9 1,725,963 - +1.1 1,726,014 + +0.6 1,726,014 + -0.3 1,726,014 + -1.0 1,726,022 - -0.4 1,726,022 - -0.5 1,726,022 - -2.1 1,726,022 - -0.1 1,726,022 - +0.3 1,726,022 - +0.4 1,726,022 - -3.6 1,726,033 - -0.0 1,726,116 + +0.5 1,726,198 + katG Synpcc7942_1656 0.13 -0.2 1,726,199 + katG Synpcc7942_1656 0.13 -0.7 1,726,208 - katG Synpcc7942_1656 0.13 -2.3 1,726,213 + katG Synpcc7942_1656 0.14 -1.9 1,726,270 + katG Synpcc7942_1656 0.16 +1.2 1,726,279 + katG Synpcc7942_1656 0.17 +2.2 1,726,280 + katG Synpcc7942_1656 0.17 +0.8 1,726,287 - katG Synpcc7942_1656 0.17 +0.9 1,726,328 + katG Synpcc7942_1656 0.19 +0.7 1,726,336 + katG Synpcc7942_1656 0.19 -0.4 1,726,336 + katG Synpcc7942_1656 0.19 -0.1 1,726,336 + katG Synpcc7942_1656 0.19 +0.1 1,726,354 + katG Synpcc7942_1656 0.20 +1.0 1,726,383 + katG Synpcc7942_1656 0.21 +0.7 1,726,390 + katG Synpcc7942_1656 0.22 -0.4 1,726,391 - katG Synpcc7942_1656 0.22 +0.8 1,726,402 + katG Synpcc7942_1656 0.22 -1.1 1,726,412 + katG Synpcc7942_1656 0.23 +1.0 1,726,423 + katG Synpcc7942_1656 0.23 +0.2 1,726,423 + katG Synpcc7942_1656 0.23 -0.1 1,726,424 + katG Synpcc7942_1656 0.23 +0.1 1,726,431 - katG Synpcc7942_1656 0.24 +0.2 1,726,431 - katG Synpcc7942_1656 0.24 -1.9 1,726,474 - katG Synpcc7942_1656 0.26 +0.2 1,726,483 - katG Synpcc7942_1656 0.26 +2.9 1,726,483 - katG Synpcc7942_1656 0.26 +0.9 1,726,488 - katG Synpcc7942_1656 0.26 +2.5 1,726,498 + katG Synpcc7942_1656 0.27 +2.1 1,726,527 + katG Synpcc7942_1656 0.28 +1.1 1,726,591 - katG Synpcc7942_1656 0.31 +0.9 1,726,631 + +0.9 1,726,640 - katG Synpcc7942_1656 0.33 +0.6 1,726,675 - katG Synpcc7942_1656 0.35 +1.5 1,726,676 - katG Synpcc7942_1656 0.35 -0.8 1,726,678 + katG Synpcc7942_1656 0.35 -0.4 1,726,678 + katG Synpcc7942_1656 0.35 -1.7 1,726,678 + katG Synpcc7942_1656 0.35 +0.1 1,726,678 + katG Synpcc7942_1656 0.35 -0.7 1,726,678 + katG Synpcc7942_1656 0.35 -0.3 1,726,678 + katG Synpcc7942_1656 0.35 +1.1 1,726,678 + katG Synpcc7942_1656 0.35 +1.1 1,726,678 + katG Synpcc7942_1656 0.35 +1.1 1,726,678 + katG Synpcc7942_1656 0.35 -0.1 1,726,678 + katG Synpcc7942_1656 0.35 -0.1 1,726,678 + katG Synpcc7942_1656 0.35 -0.0 1,726,680 + katG Synpcc7942_1656 0.35 +0.9 1,726,686 - katG Synpcc7942_1656 0.35 +0.2 1,726,686 - katG Synpcc7942_1656 0.35 -1.4 1,726,686 - katG Synpcc7942_1656 0.35 -0.1 1,726,686 - katG Synpcc7942_1656 0.35 -0.1 1,726,686 - katG Synpcc7942_1656 0.35 +1.0 1,726,686 - katG Synpcc7942_1656 0.35 +0.4 1,726,686 - katG Synpcc7942_1656 0.35 -1.4 1,726,688 + katG Synpcc7942_1656 0.36 +1.4 1,726,688 + katG Synpcc7942_1656 0.36 -0.6 1,726,688 + katG Synpcc7942_1656 0.36 +1.9 1,726,693 - katG Synpcc7942_1656 0.36 +1.8 1,726,696 - katG Synpcc7942_1656 0.36 -0.5 1,726,696 - katG Synpcc7942_1656 0.36 +2.2 1,726,701 + katG Synpcc7942_1656 0.36 +2.7 1,726,703 + katG Synpcc7942_1656 0.36 +0.3 1,726,706 - katG Synpcc7942_1656 0.36 -1.4 1,726,711 - katG Synpcc7942_1656 0.37 -1.1 1,726,711 - -0.1 1,726,715 - katG Synpcc7942_1656 0.37 +1.1 1,726,851 + katG Synpcc7942_1656 0.43 -1.7 1,726,859 - katG Synpcc7942_1656 0.43 -0.2 1,726,862 + katG Synpcc7942_1656 0.44 +0.6 1,726,862 + katG Synpcc7942_1656 0.44 -1.4 1,726,870 - katG Synpcc7942_1656 0.44 +2.8 1,726,881 + +1.5 1,726,889 + katG Synpcc7942_1656 0.45 +0.6 1,726,932 + katG Synpcc7942_1656 0.47 +1.8 1,726,941 - katG Synpcc7942_1656 0.47 +0.3 1,727,057 - katG Synpcc7942_1656 0.53 +2.2 1,727,084 - katG Synpcc7942_1656 0.54 -0.1 1,727,087 + katG Synpcc7942_1656 0.54 +0.7 1,727,097 - katG Synpcc7942_1656 0.54 +1.9 1,727,118 - katG Synpcc7942_1656 0.55 -0.1 1,727,124 - katG Synpcc7942_1656 0.56 -1.1 1,727,126 + katG Synpcc7942_1656 0.56 +0.2 1,727,127 - katG Synpcc7942_1656 0.56 -1.2 1,727,128 - katG Synpcc7942_1656 0.56 +0.9 1,727,138 + katG Synpcc7942_1656 0.56 -0.1 1,727,138 + katG Synpcc7942_1656 0.56 -0.7 1,727,138 + katG Synpcc7942_1656 0.56 +2.1 1,727,147 + katG Synpcc7942_1656 0.57 -0.1 1,727,147 + katG Synpcc7942_1656 0.57 -1.1 1,727,155 - katG Synpcc7942_1656 0.57 +1.2 1,727,158 + katG Synpcc7942_1656 0.57 +0.4 1,727,161 + katG Synpcc7942_1656 0.57 +0.2 1,727,175 + katG Synpcc7942_1656 0.58 -0.1 1,727,178 - katG Synpcc7942_1656 0.58 +0.1 1,727,181 - katG Synpcc7942_1656 0.58 +0.1 1,727,188 - katG Synpcc7942_1656 0.59 -2.1 1,727,201 + katG Synpcc7942_1656 0.59 +0.7 1,727,234 - katG Synpcc7942_1656 0.61 -0.6 1,727,254 - katG Synpcc7942_1656 0.62 +1.1 1,727,291 - katG Synpcc7942_1656 0.63 -1.7 1,727,291 - katG Synpcc7942_1656 0.63 +2.5 1,727,298 - katG Synpcc7942_1656 0.64 -1.7 1,727,301 - katG Synpcc7942_1656 0.64 +1.2 1,727,343 + katG Synpcc7942_1656 0.66 +1.2 1,727,348 + katG Synpcc7942_1656 0.66 +0.3 1,727,350 + katG Synpcc7942_1656 0.66 +0.1 1,727,372 + katG Synpcc7942_1656 0.67 +0.6 1,727,372 + katG Synpcc7942_1656 0.67 -0.3 1,727,375 - katG Synpcc7942_1656 0.67 +1.2 1,727,390 - katG Synpcc7942_1656 0.68 +0.5 1,727,390 - katG Synpcc7942_1656 0.68 -0.1 1,727,421 - katG Synpcc7942_1656 0.69 -0.1 1,727,422 - katG Synpcc7942_1656 0.69 +3.2 1,727,422 - katG Synpcc7942_1656 0.69 +0.2 1,727,422 - katG Synpcc7942_1656 0.69 +1.8 1,727,422 - katG Synpcc7942_1656 0.69 +0.7 1,727,422 - katG Synpcc7942_1656 0.69 +1.2 1,727,468 + katG Synpcc7942_1656 0.72 +0.9 1,727,476 - katG Synpcc7942_1656 0.72 +1.1 1,727,476 - katG Synpcc7942_1656 0.72 -1.6 1,727,476 - katG Synpcc7942_1656 0.72 -0.1 1,727,482 + katG Synpcc7942_1656 0.72 +0.1 1,727,507 - katG Synpcc7942_1656 0.73 -0.1 1,727,625 - katG Synpcc7942_1656 0.79 -0.3 1,727,695 + +0.5 1,727,735 + katG Synpcc7942_1656 0.84 -2.4 1,727,767 + katG Synpcc7942_1656 0.85 -1.9 1,727,823 - katG Synpcc7942_1656 0.88 -0.7 1,727,895 + +0.7 1,728,046 + +1.2 1,728,206 - +0.5 1,728,243 - +0.1 1,728,245 + +1.0 1,728,250 - +0.6 1,728,281 - -0.8 1,728,378 + -0.6 1,728,401 - -0.8 1,728,405 + -0.4 1,728,408 - +0.3 1,728,410 + -1.1 1,728,421 + -0.4 1,728,422 + -1.1 1,728,422 + +0.9 1,728,422 + -0.8 1,728,512 + Synpcc7942_1657 0.27 -0.5 1,728,515 + Synpcc7942_1657 0.28 -1.1 1,728,535 - Synpcc7942_1657 0.37 +1.5 1,728,548 + Synpcc7942_1657 0.43 +2.6 1,728,569 - Synpcc7942_1657 0.52 -0.1 1,728,569 - Synpcc7942_1657 0.52 -1.2 1,728,643 + Synpcc7942_1657 0.86 -1.1 1,728,643 + Synpcc7942_1657 0.86 +0.3 1,728,648 + Synpcc7942_1657 0.88 -0.1 1,728,661 - +1.3 1,728,715 + -2.7 1,728,733 - -0.1 1,728,735 + -0.6 1,728,735 + +0.9 1,728,743 - +1.1 1,728,743 - +0.1 1,728,751 - -1.8 1,728,785 - -0.6 1,728,875 + Synpcc7942_1658 0.19 -0.7 1,728,875 + Synpcc7942_1658 0.19 +1.1 1,728,883 - Synpcc7942_1658 0.21 +0.1 1,728,951 - Synpcc7942_1658 0.36 +0.6 1,728,951 - -0.8 1,728,955 + Synpcc7942_1658 0.36 -0.5 1,728,965 + Synpcc7942_1658 0.39 -0.1 1,728,982 + Synpcc7942_1658 0.42 -2.1 1,728,999 + Synpcc7942_1658 0.46 +0.3 1,729,002 - Synpcc7942_1658 0.47 -1.0 1,729,007 - Synpcc7942_1658 0.48 +0.7 1,729,018 - Synpcc7942_1658 0.50 -0.4 1,729,030 - Synpcc7942_1658 0.53 +0.2 1,729,034 + Synpcc7942_1658 0.54 +0.6 1,729,034 + Synpcc7942_1658 0.54 -1.1 1,729,045 + Synpcc7942_1658 0.56 +0.9 1,729,045 + Synpcc7942_1658 0.56 -0.6 1,729,045 + Synpcc7942_1658 0.56 -1.4 1,729,045 + Synpcc7942_1658 0.56 -0.1
Or see this region's nucleotide sequence