Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0950 and nadC are separated by 99 nucleotides nadC and Synpcc7942_0952 are separated by 143 nucleotides
Synpcc7942_0950: Synpcc7942_0950 - putative multiple sugar transport system substrate-binding protein, at 958,421 to 959,737
_0950
Synpcc7942_0951: nadC - nicotinate-nucleotide pyrophosphorylase, at 959,837 to 960,685
nadC
Synpcc7942_0952: Synpcc7942_0952 - hypothetical protein, at 960,829 to 961,620
_0952
Position (kb) 959
960
961 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 958.839 kb on + strand, within Synpcc7942_0950 at 958.847 kb on - strand, within Synpcc7942_0950 at 958.858 kb on - strand, within Synpcc7942_0950 at 958.882 kb on - strand, within Synpcc7942_0950 at 958.911 kb on + strand, within Synpcc7942_0950 at 958.915 kb on - strand, within Synpcc7942_0950 at 958.936 kb on + strand, within Synpcc7942_0950 at 958.970 kb on - strand, within Synpcc7942_0950 at 958.970 kb on - strand, within Synpcc7942_0950 at 958.985 kb on - strand, within Synpcc7942_0950 at 959.006 kb on - strand, within Synpcc7942_0950 at 959.029 kb on + strand, within Synpcc7942_0950 at 959.114 kb on + strand, within Synpcc7942_0950 at 959.114 kb on + strand, within Synpcc7942_0950 at 959.114 kb on + strand at 959.122 kb on - strand, within Synpcc7942_0950 at 959.122 kb on - strand, within Synpcc7942_0950 at 959.122 kb on - strand, within Synpcc7942_0950 at 959.129 kb on + strand, within Synpcc7942_0950 at 959.129 kb on - strand, within Synpcc7942_0950 at 959.140 kb on + strand, within Synpcc7942_0950 at 959.140 kb on + strand, within Synpcc7942_0950 at 959.140 kb on + strand, within Synpcc7942_0950 at 959.148 kb on - strand, within Synpcc7942_0950 at 959.148 kb on - strand, within Synpcc7942_0950 at 959.156 kb on + strand, within Synpcc7942_0950 at 959.156 kb on + strand, within Synpcc7942_0950 at 959.158 kb on - strand, within Synpcc7942_0950 at 959.177 kb on + strand, within Synpcc7942_0950 at 959.195 kb on + strand, within Synpcc7942_0950 at 959.219 kb on - strand, within Synpcc7942_0950 at 959.252 kb on - strand, within Synpcc7942_0950 at 959.317 kb on - strand, within Synpcc7942_0950 at 959.317 kb on - strand, within Synpcc7942_0950 at 959.365 kb on + strand, within Synpcc7942_0950 at 959.434 kb on + strand, within Synpcc7942_0950 at 959.442 kb on - strand, within Synpcc7942_0950 at 959.468 kb on - strand, within Synpcc7942_0950 at 959.468 kb on - strand, within Synpcc7942_0950 at 959.505 kb on + strand, within Synpcc7942_0950 at 959.525 kb on + strand, within Synpcc7942_0950 at 959.570 kb on + strand, within Synpcc7942_0950 at 959.645 kb on - strand at 959.645 kb on - strand at 959.645 kb on - strand at 959.645 kb on - strand at 959.661 kb on + strand at 959.661 kb on - strand at 959.661 kb on - strand at 959.666 kb on + strand at 959.692 kb on - strand at 959.698 kb on + strand at 959.724 kb on + strand at 959.745 kb on + strand at 959.745 kb on + strand at 959.745 kb on + strand at 959.745 kb on + strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.772 kb on + strand at 959.782 kb on + strand at 959.790 kb on - strand at 959.790 kb on - strand at 959.819 kb on + strand at 959.847 kb on + strand at 959.850 kb on - strand at 959.921 kb on + strand at 959.922 kb on + strand, within nadC at 959.923 kb on - strand, within nadC at 959.930 kb on - strand, within nadC at 960.002 kb on + strand, within nadC at 960.018 kb on + strand, within nadC at 960.094 kb on + strand, within nadC at 960.103 kb on + strand, within nadC at 960.118 kb on + strand, within nadC at 960.126 kb on - strand, within nadC at 960.126 kb on - strand, within nadC at 960.137 kb on + strand, within nadC at 960.146 kb on - strand, within nadC at 960.265 kb on + strand, within nadC at 960.273 kb on - strand, within nadC at 960.309 kb on + strand, within nadC at 960.435 kb on + strand, within nadC at 960.443 kb on - strand, within nadC at 960.687 kb on + strand at 960.687 kb on + strand at 960.695 kb on - strand at 960.695 kb on - strand at 960.707 kb on - strand at 960.707 kb on - strand at 960.717 kb on - strand at 960.727 kb on - strand at 960.735 kb on + strand at 960.735 kb on + strand at 960.737 kb on + strand at 960.743 kb on - strand at 960.752 kb on - strand at 960.767 kb on - strand at 960.802 kb on - strand at 960.818 kb on + strand at 960.818 kb on + strand at 960.826 kb on + strand at 960.826 kb on + strand at 960.834 kb on - strand at 960.891 kb on + strand at 960.892 kb on - strand at 960.895 kb on + strand at 960.905 kb on - strand at 961.003 kb on - strand, within Synpcc7942_0952 at 961.024 kb on - strand, within Synpcc7942_0952 at 961.051 kb on + strand, within Synpcc7942_0952 at 961.093 kb on - strand, within Synpcc7942_0952 at 961.118 kb on + strand, within Synpcc7942_0952 at 961.128 kb on + strand, within Synpcc7942_0952 at 961.149 kb on + strand, within Synpcc7942_0952 at 961.149 kb on + strand, within Synpcc7942_0952 at 961.153 kb on + strand, within Synpcc7942_0952 at 961.157 kb on - strand, within Synpcc7942_0952 at 961.157 kb on - strand, within Synpcc7942_0952 at 961.227 kb on - strand, within Synpcc7942_0952 at 961.237 kb on + strand, within Synpcc7942_0952 at 961.333 kb on + strand, within Synpcc7942_0952 at 961.349 kb on - strand, within Synpcc7942_0952 at 961.367 kb on + strand, within Synpcc7942_0952 at 961.375 kb on - strand, within Synpcc7942_0952 at 961.415 kb on - strand, within Synpcc7942_0952 at 961.447 kb on + strand, within Synpcc7942_0952 at 961.452 kb on + strand, within Synpcc7942_0952 at 961.474 kb on - strand, within Synpcc7942_0952 at 961.484 kb on - strand, within Synpcc7942_0952 at 961.488 kb on + strand at 961.511 kb on - strand, within Synpcc7942_0952 at 961.537 kb on - strand, within Synpcc7942_0952 at 961.564 kb on + strand at 961.564 kb on + strand at 961.564 kb on + strand at 961.566 kb on - strand at 961.567 kb on - strand at 961.572 kb on - strand at 961.572 kb on - strand at 961.574 kb on - strand at 961.594 kb on - strand at 961.594 kb on - strand at 961.594 kb on - strand at 961.601 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 958,839 + Synpcc7942_0950 0.32 +1.9 958,847 - Synpcc7942_0950 0.32 +0.6 958,858 - Synpcc7942_0950 0.33 -0.5 958,882 - Synpcc7942_0950 0.35 +1.2 958,911 + Synpcc7942_0950 0.37 +1.7 958,915 - Synpcc7942_0950 0.38 -0.4 958,936 + Synpcc7942_0950 0.39 +0.5 958,970 - Synpcc7942_0950 0.42 -0.8 958,970 - Synpcc7942_0950 0.42 -0.1 958,985 - Synpcc7942_0950 0.43 -0.1 959,006 - Synpcc7942_0950 0.44 +1.3 959,029 + Synpcc7942_0950 0.46 -1.1 959,114 + Synpcc7942_0950 0.53 +1.1 959,114 + Synpcc7942_0950 0.53 +0.9 959,114 + +0.9 959,122 - Synpcc7942_0950 0.53 -0.1 959,122 - Synpcc7942_0950 0.53 +1.2 959,122 - Synpcc7942_0950 0.53 +0.3 959,129 + Synpcc7942_0950 0.54 +0.7 959,129 - Synpcc7942_0950 0.54 +0.2 959,140 + Synpcc7942_0950 0.55 -0.5 959,140 + Synpcc7942_0950 0.55 +1.1 959,140 + Synpcc7942_0950 0.55 +2.9 959,148 - Synpcc7942_0950 0.55 +0.3 959,148 - Synpcc7942_0950 0.55 +1.1 959,156 + Synpcc7942_0950 0.56 -2.9 959,156 + Synpcc7942_0950 0.56 -0.7 959,158 - Synpcc7942_0950 0.56 -0.7 959,177 + Synpcc7942_0950 0.57 +0.3 959,195 + Synpcc7942_0950 0.59 +2.2 959,219 - Synpcc7942_0950 0.61 +0.2 959,252 - Synpcc7942_0950 0.63 +1.8 959,317 - Synpcc7942_0950 0.68 +0.9 959,317 - Synpcc7942_0950 0.68 +1.1 959,365 + Synpcc7942_0950 0.72 +1.0 959,434 + Synpcc7942_0950 0.77 +0.6 959,442 - Synpcc7942_0950 0.78 -1.7 959,468 - Synpcc7942_0950 0.79 +3.6 959,468 - Synpcc7942_0950 0.79 +0.7 959,505 + Synpcc7942_0950 0.82 +1.2 959,525 + Synpcc7942_0950 0.84 -0.1 959,570 + Synpcc7942_0950 0.87 +0.6 959,645 - -0.1 959,645 - -1.4 959,645 - -1.1 959,645 - +2.5 959,661 + -1.1 959,661 - -2.9 959,661 - +0.9 959,666 + +1.3 959,692 - +0.5 959,698 + +0.9 959,724 + +1.5 959,745 + +0.1 959,745 + -0.5 959,745 + -1.4 959,745 + -1.1 959,753 - -0.2 959,753 - -1.9 959,753 - +0.3 959,753 - +0.9 959,753 - +1.1 959,753 - -0.1 959,772 + +2.2 959,782 + +1.0 959,790 - -1.5 959,790 - -2.1 959,819 + +0.2 959,847 + -2.1 959,850 - -1.2 959,921 + -2.7 959,922 + nadC Synpcc7942_0951 0.10 -2.4 959,923 - nadC Synpcc7942_0951 0.10 -1.7 959,930 - nadC Synpcc7942_0951 0.11 -0.1 960,002 + nadC Synpcc7942_0951 0.19 -1.7 960,018 + nadC Synpcc7942_0951 0.21 -1.7 960,094 + nadC Synpcc7942_0951 0.30 -1.1 960,103 + nadC Synpcc7942_0951 0.31 -2.3 960,118 + nadC Synpcc7942_0951 0.33 -0.1 960,126 - nadC Synpcc7942_0951 0.34 -1.7 960,126 - nadC Synpcc7942_0951 0.34 -1.7 960,137 + nadC Synpcc7942_0951 0.35 -1.5 960,146 - nadC Synpcc7942_0951 0.36 -1.3 960,265 + nadC Synpcc7942_0951 0.50 -1.7 960,273 - nadC Synpcc7942_0951 0.51 -1.9 960,309 + nadC Synpcc7942_0951 0.56 -2.7 960,435 + nadC Synpcc7942_0951 0.70 -3.9 960,443 - nadC Synpcc7942_0951 0.71 -1.1 960,687 + -0.1 960,687 + -1.7 960,695 - -1.1 960,695 - +0.0 960,707 - +0.2 960,707 - -0.6 960,717 - -1.7 960,727 - -1.3 960,735 + -1.3 960,735 + +1.5 960,737 + +0.5 960,743 - +1.2 960,752 - -1.4 960,767 - +0.2 960,802 - +0.5 960,818 + +0.1 960,818 + -0.1 960,826 + -1.4 960,826 + +1.0 960,834 - +2.7 960,891 + +1.5 960,892 - +1.0 960,895 + +0.0 960,905 - -0.1 961,003 - Synpcc7942_0952 0.22 -0.4 961,024 - Synpcc7942_0952 0.25 -2.3 961,051 + Synpcc7942_0952 0.28 -3.1 961,093 - Synpcc7942_0952 0.33 +0.9 961,118 + Synpcc7942_0952 0.36 -2.9 961,128 + Synpcc7942_0952 0.38 +2.2 961,149 + Synpcc7942_0952 0.40 -1.7 961,149 + Synpcc7942_0952 0.40 +1.5 961,153 + Synpcc7942_0952 0.41 -0.4 961,157 - Synpcc7942_0952 0.41 -1.1 961,157 - Synpcc7942_0952 0.41 +0.6 961,227 - Synpcc7942_0952 0.50 -0.1 961,237 + Synpcc7942_0952 0.52 -1.1 961,333 + Synpcc7942_0952 0.64 +0.5 961,349 - Synpcc7942_0952 0.66 -0.1 961,367 + Synpcc7942_0952 0.68 +0.5 961,375 - Synpcc7942_0952 0.69 -3.1 961,415 - Synpcc7942_0952 0.74 +0.8 961,447 + Synpcc7942_0952 0.78 -0.7 961,452 + Synpcc7942_0952 0.79 -1.7 961,474 - Synpcc7942_0952 0.81 +1.2 961,484 - Synpcc7942_0952 0.83 -0.9 961,488 + -1.4 961,511 - Synpcc7942_0952 0.86 -0.8 961,537 - Synpcc7942_0952 0.89 -2.1 961,564 + +1.1 961,564 + +0.5 961,564 + -2.4 961,566 - -0.1 961,567 - +0.3 961,572 - +0.1 961,572 - +1.6 961,574 - -0.1 961,594 - +1.9 961,594 - -0.5 961,594 - +1.5 961,601 + +0.5
Or see this region's nucleotide sequence