Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt carB and Synpcc7942_0712 are separated by 175 nucleotides Synpcc7942_0712 and ispG are separated by 99 nucleotides
Synpcc7942_0711: carB - carbamoyl phosphate synthase large subunit, at 701,604 to 704,897
carB
Synpcc7942_0712: Synpcc7942_0712 - C-terminal processing peptidase-2. Serine peptidase. MEROPS family S41A, at 705,073 to 706,350
_0712
Synpcc7942_0713: ispG - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 706,450 to 707,673
ispG
Position (kb) 705
706
707 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 704.938 kb on - strand at 705.135 kb on - strand at 705.186 kb on + strand at 705.193 kb on + strand at 705.254 kb on + strand, within Synpcc7942_0712 at 705.354 kb on - strand, within Synpcc7942_0712 at 705.354 kb on - strand, within Synpcc7942_0712 at 705.354 kb on - strand, within Synpcc7942_0712 at 705.447 kb on + strand, within Synpcc7942_0712 at 705.455 kb on - strand, within Synpcc7942_0712 at 705.462 kb on - strand, within Synpcc7942_0712 at 705.553 kb on + strand, within Synpcc7942_0712 at 705.618 kb on + strand, within Synpcc7942_0712 at 705.945 kb on + strand, within Synpcc7942_0712 at 705.969 kb on - strand, within Synpcc7942_0712 at 706.004 kb on - strand, within Synpcc7942_0712 at 706.078 kb on + strand, within Synpcc7942_0712 at 706.086 kb on - strand, within Synpcc7942_0712 at 706.086 kb on - strand, within Synpcc7942_0712 at 706.091 kb on + strand, within Synpcc7942_0712 at 706.099 kb on - strand, within Synpcc7942_0712 at 706.101 kb on - strand, within Synpcc7942_0712 at 706.151 kb on + strand, within Synpcc7942_0712 at 706.248 kb on + strand at 706.282 kb on + strand at 706.352 kb on + strand at 706.360 kb on - strand at 706.387 kb on + strand at 706.387 kb on + strand at 706.387 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 704,938 - +1.3 705,135 - -1.7 705,186 + -1.1 705,193 + -2.7 705,254 + Synpcc7942_0712 0.14 -2.7 705,354 - Synpcc7942_0712 0.22 -0.1 705,354 - Synpcc7942_0712 0.22 -2.1 705,354 - Synpcc7942_0712 0.22 -2.7 705,447 + Synpcc7942_0712 0.29 -1.7 705,455 - Synpcc7942_0712 0.30 -3.9 705,462 - Synpcc7942_0712 0.30 -1.1 705,553 + Synpcc7942_0712 0.38 -3.3 705,618 + Synpcc7942_0712 0.43 -2.1 705,945 + Synpcc7942_0712 0.68 -2.7 705,969 - Synpcc7942_0712 0.70 -0.5 706,004 - Synpcc7942_0712 0.73 -2.4 706,078 + Synpcc7942_0712 0.79 -2.9 706,086 - Synpcc7942_0712 0.79 -2.1 706,086 - Synpcc7942_0712 0.79 -1.6 706,091 + Synpcc7942_0712 0.80 -1.1 706,099 - Synpcc7942_0712 0.80 -2.7 706,101 - Synpcc7942_0712 0.80 -0.4 706,151 + Synpcc7942_0712 0.84 -0.1 706,248 + -2.1 706,282 + -1.9 706,352 + -0.4 706,360 - -0.1 706,387 + +1.0 706,387 + +0.4 706,387 + +1.9
Or see this region's nucleotide sequence