Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lysA and Synpcc7942_0263 are separated by 79 nucleotides Synpcc7942_0263 and uppS overlap by 4 nucleotides uppS and Synpcc7942_0265 are separated by 12 nucleotides Synpcc7942_0265 and dnaJ4 overlap by 23 nucleotides
Synpcc7942_0262: lysA - diaminopimelate decarboxylase, at 259,226 to 260,620
lysA
Synpcc7942_0263: Synpcc7942_0263 - Protein of unknown function DUF147, at 260,700 to 261,620
_0263
Synpcc7942_0264: uppS - Undecaprenyl pyrophosphate synthetase, at 261,617 to 262,372
uppS
Synpcc7942_0265: Synpcc7942_0265 - hypothetical protein, at 262,385 to 262,660
_0265
Synpcc7942_0266: dnaJ4 - Heat shock protein DnaJ-like, at 262,638 to 263,195
dnaJ4
Position (kb) 261
262
263 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 260.655 kb on + strand at 260.663 kb on - strand at 260.663 kb on - strand at 260.667 kb on + strand at 260.667 kb on + strand at 260.667 kb on + strand at 260.667 kb on + strand at 260.675 kb on - strand at 260.675 kb on - strand at 260.675 kb on - strand at 260.675 kb on - strand at 260.675 kb on - strand at 260.690 kb on + strand at 260.690 kb on + strand at 260.690 kb on + strand at 260.696 kb on + strand at 260.698 kb on - strand at 260.704 kb on - strand at 260.834 kb on + strand, within Synpcc7942_0263 at 260.844 kb on + strand, within Synpcc7942_0263 at 260.849 kb on + strand, within Synpcc7942_0263 at 260.859 kb on + strand, within Synpcc7942_0263 at 260.904 kb on - strand, within Synpcc7942_0263 at 260.951 kb on + strand, within Synpcc7942_0263 at 260.951 kb on - strand, within Synpcc7942_0263 at 261.146 kb on - strand, within Synpcc7942_0263 at 261.195 kb on + strand, within Synpcc7942_0263 at 261.209 kb on + strand, within Synpcc7942_0263 at 261.289 kb on + strand, within Synpcc7942_0263 at 261.304 kb on + strand, within Synpcc7942_0263 at 262.367 kb on + strand at 262.381 kb on - strand at 262.383 kb on + strand at 262.386 kb on - strand at 262.397 kb on - strand at 262.417 kb on + strand, within Synpcc7942_0265 at 262.422 kb on + strand, within Synpcc7942_0265 at 262.422 kb on - strand, within Synpcc7942_0265 at 262.453 kb on + strand, within Synpcc7942_0265 at 262.454 kb on + strand, within Synpcc7942_0265 at 262.462 kb on - strand, within Synpcc7942_0265 at 262.479 kb on + strand, within Synpcc7942_0265 at 262.503 kb on + strand, within Synpcc7942_0265 at 262.503 kb on + strand, within Synpcc7942_0265 at 262.514 kb on + strand, within Synpcc7942_0265 at 262.535 kb on + strand, within Synpcc7942_0265 at 262.545 kb on + strand, within Synpcc7942_0265 at 262.553 kb on + strand, within Synpcc7942_0265 at 262.561 kb on - strand, within Synpcc7942_0265 at 262.641 kb on - strand at 262.643 kb on - strand at 262.656 kb on + strand at 262.711 kb on - strand, within dnaJ4 at 262.718 kb on - strand, within dnaJ4 at 262.733 kb on - strand, within dnaJ4 at 262.754 kb on + strand, within dnaJ4 at 262.789 kb on + strand, within dnaJ4 at 262.797 kb on - strand at 262.797 kb on - strand, within dnaJ4 at 262.799 kb on + strand, within dnaJ4 at 262.818 kb on - strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.881 kb on - strand, within dnaJ4 at 262.897 kb on + strand, within dnaJ4 at 262.908 kb on + strand, within dnaJ4 at 262.927 kb on + strand, within dnaJ4 at 262.928 kb on + strand, within dnaJ4 at 262.936 kb on - strand at 262.941 kb on - strand, within dnaJ4 at 262.946 kb on - strand, within dnaJ4 at 262.963 kb on + strand, within dnaJ4 at 262.966 kb on - strand, within dnaJ4 at 262.971 kb on - strand, within dnaJ4 at 262.989 kb on + strand, within dnaJ4 at 263.011 kb on + strand, within dnaJ4 at 263.022 kb on - strand, within dnaJ4 at 263.024 kb on - strand, within dnaJ4 at 263.034 kb on - strand, within dnaJ4 at 263.034 kb on - strand, within dnaJ4 at 263.053 kb on + strand, within dnaJ4 at 263.068 kb on + strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.102 kb on + strand, within dnaJ4 at 263.109 kb on - strand, within dnaJ4 at 263.109 kb on - strand, within dnaJ4 at 263.111 kb on + strand, within dnaJ4 at 263.116 kb on + strand, within dnaJ4 at 263.119 kb on - strand, within dnaJ4 at 263.119 kb on - strand, within dnaJ4 at 263.124 kb on - strand, within dnaJ4 at 263.124 kb on - strand, within dnaJ4 at 263.178 kb on - strand at 263.185 kb on - strand at 263.195 kb on - strand at 263.225 kb on + strand at 263.230 kb on + strand at 263.233 kb on - strand at 263.237 kb on - strand at 263.238 kb on - strand at 263.267 kb on + strand at 263.296 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 260,655 + +1.4 260,663 - -2.1 260,663 - -0.9 260,667 + -0.6 260,667 + -1.2 260,667 + -2.1 260,667 + -0.4 260,675 - -1.4 260,675 - -2.6 260,675 - -1.1 260,675 - -0.5 260,675 - -2.1 260,690 + +0.1 260,690 + -1.6 260,690 + +0.5 260,696 + -0.8 260,698 - -0.1 260,704 - +1.2 260,834 + Synpcc7942_0263 0.15 -2.1 260,844 + Synpcc7942_0263 0.16 -2.9 260,849 + Synpcc7942_0263 0.16 -4.1 260,859 + Synpcc7942_0263 0.17 +0.7 260,904 - Synpcc7942_0263 0.22 +1.2 260,951 + Synpcc7942_0263 0.27 -4.0 260,951 - Synpcc7942_0263 0.27 -1.1 261,146 - Synpcc7942_0263 0.48 -0.5 261,195 + Synpcc7942_0263 0.54 -2.6 261,209 + Synpcc7942_0263 0.55 -1.1 261,289 + Synpcc7942_0263 0.64 -1.2 261,304 + Synpcc7942_0263 0.66 -0.9 262,367 + -1.1 262,381 - -1.1 262,383 + +1.5 262,386 - +0.2 262,397 - +0.9 262,417 + Synpcc7942_0265 0.12 +1.8 262,422 + Synpcc7942_0265 0.13 +1.6 262,422 - Synpcc7942_0265 0.13 +0.8 262,453 + Synpcc7942_0265 0.25 +0.8 262,454 + Synpcc7942_0265 0.25 +0.7 262,462 - Synpcc7942_0265 0.28 -0.3 262,479 + Synpcc7942_0265 0.34 +0.9 262,503 + Synpcc7942_0265 0.43 +3.6 262,503 + Synpcc7942_0265 0.43 +1.9 262,514 + Synpcc7942_0265 0.47 +0.3 262,535 + Synpcc7942_0265 0.54 +1.9 262,545 + Synpcc7942_0265 0.58 -1.1 262,553 + Synpcc7942_0265 0.61 -0.2 262,561 - Synpcc7942_0265 0.64 +1.7 262,641 - +2.3 262,643 - +1.3 262,656 + +0.9 262,711 - dnaJ4 Synpcc7942_0266 0.13 -1.4 262,718 - dnaJ4 Synpcc7942_0266 0.14 +1.0 262,733 - dnaJ4 Synpcc7942_0266 0.17 -1.1 262,754 + dnaJ4 Synpcc7942_0266 0.21 -2.2 262,789 + dnaJ4 Synpcc7942_0266 0.27 -1.6 262,797 - -0.1 262,797 - dnaJ4 Synpcc7942_0266 0.28 -1.1 262,799 + dnaJ4 Synpcc7942_0266 0.29 -2.6 262,818 - dnaJ4 Synpcc7942_0266 0.32 +0.0 262,827 + dnaJ4 Synpcc7942_0266 0.34 -1.6 262,827 + dnaJ4 Synpcc7942_0266 0.34 -0.7 262,827 + dnaJ4 Synpcc7942_0266 0.34 -0.5 262,881 - dnaJ4 Synpcc7942_0266 0.44 -0.1 262,897 + dnaJ4 Synpcc7942_0266 0.46 +1.5 262,908 + dnaJ4 Synpcc7942_0266 0.48 -1.4 262,927 + dnaJ4 Synpcc7942_0266 0.52 -1.2 262,928 + dnaJ4 Synpcc7942_0266 0.52 -3.9 262,936 - -1.6 262,941 - dnaJ4 Synpcc7942_0266 0.54 -1.6 262,946 - dnaJ4 Synpcc7942_0266 0.55 +1.1 262,963 + dnaJ4 Synpcc7942_0266 0.58 -0.9 262,966 - dnaJ4 Synpcc7942_0266 0.59 -0.7 262,971 - dnaJ4 Synpcc7942_0266 0.60 +1.5 262,989 + dnaJ4 Synpcc7942_0266 0.63 -0.1 263,011 + dnaJ4 Synpcc7942_0266 0.67 -1.1 263,022 - dnaJ4 Synpcc7942_0266 0.69 -0.9 263,024 - dnaJ4 Synpcc7942_0266 0.69 -0.9 263,034 - dnaJ4 Synpcc7942_0266 0.71 -2.5 263,034 - dnaJ4 Synpcc7942_0266 0.71 -0.1 263,053 + dnaJ4 Synpcc7942_0266 0.74 -1.1 263,068 + dnaJ4 Synpcc7942_0266 0.77 -2.1 263,076 - dnaJ4 Synpcc7942_0266 0.78 +3.0 263,076 - dnaJ4 Synpcc7942_0266 0.78 +0.6 263,076 - dnaJ4 Synpcc7942_0266 0.78 -1.2 263,102 + dnaJ4 Synpcc7942_0266 0.83 +0.9 263,109 - dnaJ4 Synpcc7942_0266 0.84 -0.6 263,109 - dnaJ4 Synpcc7942_0266 0.84 +0.2 263,111 + dnaJ4 Synpcc7942_0266 0.85 -1.3 263,116 + dnaJ4 Synpcc7942_0266 0.86 +0.6 263,119 - dnaJ4 Synpcc7942_0266 0.86 +1.0 263,119 - dnaJ4 Synpcc7942_0266 0.86 -1.9 263,124 - dnaJ4 Synpcc7942_0266 0.87 -0.3 263,124 - dnaJ4 Synpcc7942_0266 0.87 -1.6 263,178 - -0.2 263,185 - -0.1 263,195 - +1.2 263,225 + -0.1 263,230 + +0.9 263,233 - +0.2 263,237 - -1.3 263,238 - +1.0 263,267 + -1.1 263,296 + +0.7
Or see this region's nucleotide sequence