Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_783

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_782 and Pf1N1B4_783 are separated by 41 nucleotidesPf1N1B4_783 and Pf1N1B4_784 are separated by 108 nucleotides Pf1N1B4_782 - FIG00960960: hypothetical protein, at 886,826 to 892,399 _782 Pf1N1B4_783 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (EC 2.1.1.14), at 892,441 to 894,753 _783 Pf1N1B4_784 - Transcriptional activator MetR, at 894,862 to 895,779 _784 Position (kb) 892 893 894 895Strain fitness (log2 ratio) -2 -1 0 1 2 3at 891.447 kb on - strand, within Pf1N1B4_782at 891.449 kb on + strandat 891.449 kb on + strand, within Pf1N1B4_782at 891.449 kb on + strand, within Pf1N1B4_782at 891.450 kb on - strand, within Pf1N1B4_782at 891.450 kb on - strand, within Pf1N1B4_782at 891.450 kb on - strand, within Pf1N1B4_782at 891.450 kb on - strand, within Pf1N1B4_782at 891.491 kb on + strand, within Pf1N1B4_782at 891.689 kb on + strand, within Pf1N1B4_782at 891.690 kb on - strand, within Pf1N1B4_782at 891.690 kb on - strand, within Pf1N1B4_782at 891.690 kb on - strand, within Pf1N1B4_782at 891.690 kb on - strand, within Pf1N1B4_782at 891.713 kb on + strand, within Pf1N1B4_782at 891.852 kb on - strandat 891.872 kb on + strandat 892.063 kb on + strandat 892.113 kb on + strandat 892.113 kb on + strandat 892.113 kb on + strandat 892.113 kb on + strandat 892.114 kb on - strandat 892.114 kb on - strandat 892.114 kb on - strandat 892.114 kb on - strandat 892.123 kb on + strandat 892.123 kb on + strandat 892.124 kb on - strandat 892.175 kb on + strandat 892.175 kb on + strandat 892.176 kb on - strandat 892.176 kb on - strandat 892.176 kb on - strandat 892.176 kb on - strandat 892.177 kb on + strandat 892.177 kb on + strandat 892.177 kb on + strandat 892.177 kb on + strandat 892.178 kb on - strandat 892.178 kb on - strandat 892.178 kb on - strandat 892.178 kb on - strandat 892.178 kb on - strandat 892.187 kb on + strandat 892.188 kb on - strandat 892.188 kb on - strandat 892.247 kb on + strandat 892.248 kb on - strandat 892.250 kb on + strandat 892.250 kb on + strandat 892.250 kb on + strandat 892.250 kb on + strandat 892.250 kb on + strandat 892.250 kb on + strandat 892.251 kb on - strandat 892.251 kb on - strandat 892.251 kb on - strandat 892.251 kb on - strandat 892.251 kb on - strandat 892.251 kb on - strandat 892.251 kb on - strandat 892.300 kb on - strandat 892.300 kb on - strandat 892.346 kb on + strandat 892.637 kb on + strandat 892.778 kb on + strand, within Pf1N1B4_783at 892.778 kb on + strand, within Pf1N1B4_783at 892.795 kb on + strand, within Pf1N1B4_783at 892.795 kb on + strand, within Pf1N1B4_783at 892.795 kb on + strand, within Pf1N1B4_783at 892.796 kb on - strand, within Pf1N1B4_783at 892.796 kb on - strand, within Pf1N1B4_783at 892.859 kb on + strand, within Pf1N1B4_783at 892.859 kb on + strand, within Pf1N1B4_783at 892.859 kb on + strand, within Pf1N1B4_783at 893.093 kb on + strand, within Pf1N1B4_783at 893.094 kb on - strand, within Pf1N1B4_783at 893.094 kb on - strand, within Pf1N1B4_783at 893.145 kb on + strandat 893.146 kb on - strand, within Pf1N1B4_783at 893.174 kb on + strand, within Pf1N1B4_783at 893.174 kb on + strand, within Pf1N1B4_783at 893.232 kb on - strand, within Pf1N1B4_783at 893.339 kb on + strand, within Pf1N1B4_783at 893.339 kb on + strand, within Pf1N1B4_783at 893.339 kb on + strand, within Pf1N1B4_783at 893.340 kb on - strand, within Pf1N1B4_783at 893.478 kb on + strand, within Pf1N1B4_783at 893.479 kb on - strand, within Pf1N1B4_783at 893.775 kb on + strand, within Pf1N1B4_783at 893.824 kb on + strand, within Pf1N1B4_783at 893.824 kb on + strand, within Pf1N1B4_783at 893.879 kb on + strand, within Pf1N1B4_783at 893.999 kb on + strand, within Pf1N1B4_783at 894.000 kb on - strand, within Pf1N1B4_783at 894.029 kb on + strand, within Pf1N1B4_783at 894.044 kb on + strand, within Pf1N1B4_783at 894.045 kb on - strand, within Pf1N1B4_783at 894.230 kb on + strand, within Pf1N1B4_783at 894.230 kb on + strand, within Pf1N1B4_783at 894.230 kb on + strand, within Pf1N1B4_783at 894.231 kb on - strand, within Pf1N1B4_783at 894.231 kb on - strand, within Pf1N1B4_783at 894.231 kb on - strand, within Pf1N1B4_783at 894.231 kb on - strand, within Pf1N1B4_783at 894.357 kb on - strand, within Pf1N1B4_783at 894.357 kb on - strand, within Pf1N1B4_783at 894.362 kb on + strand, within Pf1N1B4_783at 894.362 kb on + strand, within Pf1N1B4_783at 894.362 kb on + strand, within Pf1N1B4_783at 894.362 kb on + strand, within Pf1N1B4_783at 894.363 kb on - strand, within Pf1N1B4_783at 894.363 kb on - strandat 894.363 kb on - strand, within Pf1N1B4_783at 894.366 kb on + strand, within Pf1N1B4_783at 894.366 kb on + strand, within Pf1N1B4_783at 894.366 kb on + strand, within Pf1N1B4_783at 894.411 kb on + strand, within Pf1N1B4_783at 894.411 kb on + strand, within Pf1N1B4_783at 894.412 kb on - strand, within Pf1N1B4_783at 894.412 kb on - strand, within Pf1N1B4_783at 894.547 kb on + strandat 894.547 kb on + strandat 894.770 kb on - strandat 894.771 kb on + strandat 894.772 kb on - strandat 894.784 kb on + strandat 894.785 kb on - strandat 894.785 kb on - strandat 894.785 kb on - strandat 894.785 kb on - strandat 894.785 kb on - strandat 895.333 kb on + strand, within Pf1N1B4_784at 895.333 kb on + strand, within Pf1N1B4_784at 895.333 kb on + strand, within Pf1N1B4_784at 895.333 kb on + strand, within Pf1N1B4_784at 895.333 kb on + strand, within Pf1N1B4_784at 895.333 kb on + strand, within Pf1N1B4_784at 895.333 kb on + strand, within Pf1N1B4_784at 895.333 kb on + strand, within Pf1N1B4_784at 895.333 kb on + strand, within Pf1N1B4_784at 895.333 kb on + strand, within Pf1N1B4_784at 895.333 kb on + strand, within Pf1N1B4_784at 895.333 kb on + strand, within Pf1N1B4_784at 895.333 kb on + strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.334 kb on - strand, within Pf1N1B4_784at 895.351 kb on + strand, within Pf1N1B4_784at 895.351 kb on + strand, within Pf1N1B4_784at 895.351 kb on + strand, within Pf1N1B4_784at 895.352 kb on - strand, within Pf1N1B4_784at 895.352 kb on - strand, within Pf1N1B4_784at 895.352 kb on - strand, within Pf1N1B4_784at 895.402 kb on + strand, within Pf1N1B4_784at 895.402 kb on + strand, within Pf1N1B4_784at 895.402 kb on + strand, within Pf1N1B4_784at 895.403 kb on - strand, within Pf1N1B4_784at 895.403 kb on - strand, within Pf1N1B4_784at 895.403 kb on - strand, within Pf1N1B4_784at 895.606 kb on + strand, within Pf1N1B4_784at 895.606 kb on + strand, within Pf1N1B4_784at 895.606 kb on + strandat 895.606 kb on + strand, within Pf1N1B4_784at 895.606 kb on + strand, within Pf1N1B4_784at 895.606 kb on + strand, within Pf1N1B4_784at 895.606 kb on + strand, within Pf1N1B4_784at 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strandat 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strandat 895.621 kb on + strand, within Pf1N1B4_784at 895.621 kb on + strand, within Pf1N1B4_784at 895.622 kb on - strand, within Pf1N1B4_784at 895.670 kb on - strand, within Pf1N1B4_784at 895.705 kb on + strandat 895.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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891,447 - Pf1N1B4_782 0.83 -1.0
891,449 + -0.0
891,449 + Pf1N1B4_782 0.83 +0.4
891,449 + Pf1N1B4_782 0.83 +1.0
891,450 - Pf1N1B4_782 0.83 -1.5
891,450 - Pf1N1B4_782 0.83 -1.0
891,450 - Pf1N1B4_782 0.83 -0.3
891,450 - Pf1N1B4_782 0.83 -1.3
891,491 + Pf1N1B4_782 0.84 +1.3
891,689 + Pf1N1B4_782 0.87 +0.6
891,690 - Pf1N1B4_782 0.87 -0.4
891,690 - Pf1N1B4_782 0.87 -0.0
891,690 - Pf1N1B4_782 0.87 +0.4
891,690 - Pf1N1B4_782 0.87 +0.6
891,713 + Pf1N1B4_782 0.88 -0.0
891,852 - -0.0
891,872 + -0.0
892,063 + +1.3
892,113 + +0.6
892,113 + -0.2
892,113 + +0.5
892,113 + -1.0
892,114 - -0.0
892,114 - -1.0
892,114 - +0.9
892,114 - -1.0
892,123 + -1.0
892,123 + -0.4
892,124 - +0.8
892,175 + +0.6
892,175 + +2.0
892,176 - +1.2
892,176 - -0.4
892,176 - -0.0
892,176 - +0.7
892,177 + +0.8
892,177 + -2.0
892,177 + -0.0
892,177 + +1.3
892,178 - +1.3
892,178 - +0.8
892,178 - +1.0
892,178 - +1.0
892,178 - -0.0
892,187 + -1.6
892,188 - +1.6
892,188 - -0.4
892,247 + -1.6
892,248 - -1.3
892,250 + +0.4
892,250 + -0.4
892,250 + +1.3
892,250 + -0.8
892,250 + -0.3
892,250 + -0.6
892,251 - -0.7
892,251 - -1.6
892,251 - -0.0
892,251 - +1.0
892,251 - -1.0
892,251 - -2.0
892,251 - -0.0
892,300 - +1.6
892,300 - +2.3
892,346 + +1.0
892,637 + -0.0
892,778 + Pf1N1B4_783 0.15 -1.6
892,778 + Pf1N1B4_783 0.15 +0.6
892,795 + Pf1N1B4_783 0.15 +0.6
892,795 + Pf1N1B4_783 0.15 -0.4
892,795 + Pf1N1B4_783 0.15 +0.5
892,796 - Pf1N1B4_783 0.15 -0.0
892,796 - Pf1N1B4_783 0.15 -0.0
892,859 + Pf1N1B4_783 0.18 +0.4
892,859 + Pf1N1B4_783 0.18 -0.0
892,859 + Pf1N1B4_783 0.18 -1.0
893,093 + Pf1N1B4_783 0.28 +1.0
893,094 - Pf1N1B4_783 0.28 +0.3
893,094 - Pf1N1B4_783 0.28 +1.3
893,145 + +1.0
893,146 - Pf1N1B4_783 0.30 +0.6
893,174 + Pf1N1B4_783 0.32 -0.0
893,174 + Pf1N1B4_783 0.32 +0.4
893,232 - Pf1N1B4_783 0.34 -0.0
893,339 + Pf1N1B4_783 0.39 +2.3
893,339 + Pf1N1B4_783 0.39 -0.0
893,339 + Pf1N1B4_783 0.39 -1.2
893,340 - Pf1N1B4_783 0.39 +0.3
893,478 + Pf1N1B4_783 0.45 -0.7
893,479 - Pf1N1B4_783 0.45 +0.6
893,775 + Pf1N1B4_783 0.58 +0.3
893,824 + Pf1N1B4_783 0.60 -0.6
893,824 + Pf1N1B4_783 0.60 -1.0
893,879 + Pf1N1B4_783 0.62 -0.7
893,999 + Pf1N1B4_783 0.67 -0.3
894,000 - Pf1N1B4_783 0.67 +2.0
894,029 + Pf1N1B4_783 0.69 -1.6
894,044 + Pf1N1B4_783 0.69 -0.2
894,045 - Pf1N1B4_783 0.69 +3.0
894,230 + Pf1N1B4_783 0.77 -0.6
894,230 + Pf1N1B4_783 0.77 -1.3
894,230 + Pf1N1B4_783 0.77 +0.5
894,231 - Pf1N1B4_783 0.77 +1.2
894,231 - Pf1N1B4_783 0.77 -0.5
894,231 - Pf1N1B4_783 0.77 +0.2
894,231 - Pf1N1B4_783 0.77 +2.0
894,357 - Pf1N1B4_783 0.83 +1.0
894,357 - Pf1N1B4_783 0.83 +1.0
894,362 + Pf1N1B4_783 0.83 -0.2
894,362 + Pf1N1B4_783 0.83 -0.0
894,362 + Pf1N1B4_783 0.83 +0.6
894,362 + Pf1N1B4_783 0.83 -1.0
894,363 - Pf1N1B4_783 0.83 -0.5
894,363 - -0.0
894,363 - Pf1N1B4_783 0.83 +1.0
894,366 + Pf1N1B4_783 0.83 +0.4
894,366 + Pf1N1B4_783 0.83 +2.3
894,366 + Pf1N1B4_783 0.83 +1.6
894,411 + Pf1N1B4_783 0.85 -0.0
894,411 + Pf1N1B4_783 0.85 -0.0
894,412 - Pf1N1B4_783 0.85 -0.0
894,412 - Pf1N1B4_783 0.85 +1.6
894,547 + +1.0
894,547 + -0.0
894,770 - -0.0
894,771 + +1.5
894,772 - +0.2
894,784 + +1.2
894,785 - -0.8
894,785 - +0.4
894,785 - +0.6
894,785 - -0.2
894,785 - +1.0
895,333 + Pf1N1B4_784 0.51 +1.6
895,333 + Pf1N1B4_784 0.51 -0.0
895,333 + Pf1N1B4_784 0.51 -1.0
895,333 + Pf1N1B4_784 0.51 -0.6
895,333 + Pf1N1B4_784 0.51 -0.3
895,333 + Pf1N1B4_784 0.51 -1.3
895,333 + Pf1N1B4_784 0.51 +0.2
895,333 + Pf1N1B4_784 0.51 +0.4
895,333 + Pf1N1B4_784 0.51 +1.6
895,333 + Pf1N1B4_784 0.51 -0.0
895,333 + Pf1N1B4_784 0.51 -0.9
895,333 + Pf1N1B4_784 0.51 -0.0
895,333 + Pf1N1B4_784 0.51 +1.4
895,334 - Pf1N1B4_784 0.51 -1.6
895,334 - Pf1N1B4_784 0.51 -0.2
895,334 - Pf1N1B4_784 0.51 -0.2
895,334 - Pf1N1B4_784 0.51 -0.4
895,334 - Pf1N1B4_784 0.51 -0.4
895,334 - Pf1N1B4_784 0.51 -2.6
895,334 - Pf1N1B4_784 0.51 +0.3
895,334 - Pf1N1B4_784 0.51 -0.0
895,334 - Pf1N1B4_784 0.51 -0.0
895,334 - Pf1N1B4_784 0.51 -0.1
895,334 - Pf1N1B4_784 0.51 -1.0
895,334 - Pf1N1B4_784 0.51 -0.7
895,334 - Pf1N1B4_784 0.51 +0.6
895,351 + Pf1N1B4_784 0.53 -0.0
895,351 + Pf1N1B4_784 0.53 +1.6
895,351 + Pf1N1B4_784 0.53 -0.0
895,352 - Pf1N1B4_784 0.53 +1.4
895,352 - Pf1N1B4_784 0.53 -0.9
895,352 - Pf1N1B4_784 0.53 +1.6
895,402 + Pf1N1B4_784 0.59 +0.7
895,402 + Pf1N1B4_784 0.59 +0.1
895,402 + Pf1N1B4_784 0.59 -0.0
895,403 - Pf1N1B4_784 0.59 -0.0
895,403 - Pf1N1B4_784 0.59 -0.0
895,403 - Pf1N1B4_784 0.59 -1.3
895,606 + Pf1N1B4_784 0.81 -0.3
895,606 + Pf1N1B4_784 0.81 +0.5
895,606 + -0.0
895,606 + Pf1N1B4_784 0.81 -1.6
895,606 + Pf1N1B4_784 0.81 -0.8
895,606 + Pf1N1B4_784 0.81 -0.7
895,606 + Pf1N1B4_784 0.81 -1.0
895,607 - Pf1N1B4_784 0.81 -0.2
895,607 - Pf1N1B4_784 0.81 +0.7
895,607 - Pf1N1B4_784 0.81 -0.4
895,607 - Pf1N1B4_784 0.81 -0.4
895,607 - Pf1N1B4_784 0.81 +0.8
895,607 - +0.7
895,607 - Pf1N1B4_784 0.81 -1.9
895,607 - Pf1N1B4_784 0.81 +1.0
895,607 - -1.0
895,621 + Pf1N1B4_784 0.83 -1.0
895,621 + Pf1N1B4_784 0.83 -0.3
895,622 - Pf1N1B4_784 0.83 -2.3
895,670 - Pf1N1B4_784 0.88 -1.4
895,705 + +0.7
895,706 - -0.1

Or see this region's nucleotide sequence