Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5100

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5099 and Pf1N1B4_5100 are separated by 93 nucleotidesPf1N1B4_5100 and Pf1N1B4_5101 are separated by 180 nucleotides Pf1N1B4_5099 - Proline iminopeptidase (EC 3.4.11.5), at 5,652,893 to 5,653,837 _5099 Pf1N1B4_5100 - Transcriptional regulator ahyR/asaR family, at 5,653,931 to 5,654,689 _5100 Pf1N1B4_5101 - Proline iminopeptidase (EC 3.4.11.5), at 5,654,870 to 5,655,757 _5101 Position (kb) 5653 5654 5655Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5653.207 kb on - strand, within Pf1N1B4_5099at 5653.241 kb on - strand, within Pf1N1B4_5099at 5653.528 kb on - strand, within Pf1N1B4_5099at 5653.689 kb on + strand, within Pf1N1B4_5099at 5653.690 kb on - strandat 5653.690 kb on - strand, within Pf1N1B4_5099at 5653.690 kb on - strand, within Pf1N1B4_5099at 5653.690 kb on - strand, within Pf1N1B4_5099at 5653.702 kb on - strand, within Pf1N1B4_5099at 5653.898 kb on + strandat 5654.095 kb on + strand, within Pf1N1B4_5100at 5654.125 kb on - strand, within Pf1N1B4_5100at 5654.138 kb on - strand, within Pf1N1B4_5100at 5654.335 kb on - strand, within Pf1N1B4_5100at 5654.401 kb on - strand, within Pf1N1B4_5100at 5654.436 kb on - strand, within Pf1N1B4_5100at 5654.733 kb on + strandat 5654.786 kb on - strandat 5654.786 kb on - strandat 5654.938 kb on + strandat 5654.938 kb on + strandat 5655.002 kb on + strand, within Pf1N1B4_5101at 5655.002 kb on + strandat 5655.225 kb on - strand, within Pf1N1B4_5101

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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5,653,207 - Pf1N1B4_5099 0.33 -0.0
5,653,241 - Pf1N1B4_5099 0.37 -0.5
5,653,528 - Pf1N1B4_5099 0.67 +0.9
5,653,689 + Pf1N1B4_5099 0.84 -0.3
5,653,690 - +1.1
5,653,690 - Pf1N1B4_5099 0.84 -0.5
5,653,690 - Pf1N1B4_5099 0.84 +1.7
5,653,690 - Pf1N1B4_5099 0.84 -0.5
5,653,702 - Pf1N1B4_5099 0.86 +0.1
5,653,898 + +2.5
5,654,095 + Pf1N1B4_5100 0.22 -1.5
5,654,125 - Pf1N1B4_5100 0.26 +2.7
5,654,138 - Pf1N1B4_5100 0.27 -1.0
5,654,335 - Pf1N1B4_5100 0.53 -2.8
5,654,401 - Pf1N1B4_5100 0.62 -0.9
5,654,436 - Pf1N1B4_5100 0.67 -1.2
5,654,733 + -0.5
5,654,786 - -0.0
5,654,786 - -0.5
5,654,938 + +0.9
5,654,938 + +1.1
5,655,002 + Pf1N1B4_5101 0.15 -0.9
5,655,002 + +0.1
5,655,225 - Pf1N1B4_5101 0.40 -0.5

Or see this region's nucleotide sequence