Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4822 and Pf1N1B4_4823 overlap by 4 nucleotides Pf1N1B4_4823 and Pf1N1B4_4824 are separated by 288 nucleotides Pf1N1B4_4824 and Pf1N1B4_4825 overlap by 4 nucleotides
Pf1N1B4_4822 - Paraquat-inducible protein A, at 5,326,381 to 5,327,061
_4822
Pf1N1B4_4823 - Paraquat-inducible protein A, at 5,327,058 to 5,327,654
_4823
Pf1N1B4_4824 - Gamma-glutamyl-putrescine oxidase (EC1.4.3.-), at 5,327,943 to 5,329,244
_4824
Pf1N1B4_4825 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 5,329,241 to 5,330,329
_4825
Position (kb)
5327
5328
5329
5330 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5327.061 kb on + strand at 5327.082 kb on + strand at 5327.083 kb on - strand at 5327.151 kb on + strand, within Pf1N1B4_4823 at 5327.154 kb on + strand, within Pf1N1B4_4823 at 5327.155 kb on - strand, within Pf1N1B4_4823 at 5327.155 kb on - strand, within Pf1N1B4_4823 at 5327.155 kb on - strand, within Pf1N1B4_4823 at 5327.155 kb on - strand, within Pf1N1B4_4823 at 5327.369 kb on + strand, within Pf1N1B4_4823 at 5327.461 kb on + strand, within Pf1N1B4_4823 at 5327.564 kb on + strand, within Pf1N1B4_4823 at 5327.564 kb on + strand, within Pf1N1B4_4823 at 5327.565 kb on - strand, within Pf1N1B4_4823 at 5327.605 kb on + strand at 5327.649 kb on - strand at 5327.702 kb on + strand at 5327.702 kb on + strand at 5327.702 kb on + strand at 5327.702 kb on + strand at 5327.702 kb on + strand at 5327.702 kb on + strand at 5327.703 kb on - strand at 5327.728 kb on + strand at 5327.729 kb on - strand at 5327.729 kb on - strand at 5327.756 kb on + strand at 5327.756 kb on + strand at 5327.757 kb on - strand at 5327.887 kb on + strand at 5327.888 kb on - strand at 5327.888 kb on - strand at 5328.229 kb on + strand at 5328.284 kb on + strand, within Pf1N1B4_4824 at 5328.285 kb on - strand, within Pf1N1B4_4824 at 5328.287 kb on - strand, within Pf1N1B4_4824 at 5328.319 kb on + strand, within Pf1N1B4_4824 at 5328.464 kb on - strand at 5328.721 kb on + strand at 5328.721 kb on + strand at 5328.949 kb on + strand, within Pf1N1B4_4824 at 5328.973 kb on + strand, within Pf1N1B4_4824 at 5329.208 kb on - strand at 5329.211 kb on - strand at 5329.234 kb on + strand at 5329.318 kb on - strand at 5329.348 kb on - strand at 5329.361 kb on - strand, within Pf1N1B4_4825 at 5329.361 kb on - strand, within Pf1N1B4_4825 at 5329.361 kb on - strand, within Pf1N1B4_4825 at 5329.383 kb on + strand, within Pf1N1B4_4825 at 5329.383 kb on + strand, within Pf1N1B4_4825 at 5329.383 kb on + strand, within Pf1N1B4_4825 at 5329.384 kb on - strand, within Pf1N1B4_4825 at 5329.384 kb on - strand at 5329.686 kb on + strand, within Pf1N1B4_4825 at 5329.695 kb on + strand, within Pf1N1B4_4825 at 5329.696 kb on - strand, within Pf1N1B4_4825 at 5329.696 kb on - strand, within Pf1N1B4_4825 at 5329.732 kb on + strand, within Pf1N1B4_4825 at 5329.773 kb on + strand at 5330.172 kb on + strand, within Pf1N1B4_4825 at 5330.173 kb on - strand, within Pf1N1B4_4825 at 5330.229 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 5,327,061 + +0.1 5,327,082 + +0.5 5,327,083 - -1.1 5,327,151 + Pf1N1B4_4823 0.16 -0.5 5,327,154 + Pf1N1B4_4823 0.16 -1.5 5,327,155 - Pf1N1B4_4823 0.16 -0.9 5,327,155 - Pf1N1B4_4823 0.16 +0.5 5,327,155 - Pf1N1B4_4823 0.16 +0.7 5,327,155 - Pf1N1B4_4823 0.16 +0.8 5,327,369 + Pf1N1B4_4823 0.52 +1.5 5,327,461 + Pf1N1B4_4823 0.68 -0.1 5,327,564 + Pf1N1B4_4823 0.85 +1.8 5,327,564 + Pf1N1B4_4823 0.85 +0.1 5,327,565 - Pf1N1B4_4823 0.85 +2.1 5,327,605 + +0.7 5,327,649 - -0.1 5,327,702 + +0.5 5,327,702 + +0.5 5,327,702 + +1.5 5,327,702 + +0.8 5,327,702 + +0.2 5,327,702 + -1.0 5,327,703 - -0.5 5,327,728 + -0.5 5,327,729 - +0.5 5,327,729 - +1.5 5,327,756 + -0.7 5,327,756 + -1.7 5,327,757 - -0.5 5,327,887 + -0.2 5,327,888 - +0.4 5,327,888 - -1.1 5,328,229 + +0.5 5,328,284 + Pf1N1B4_4824 0.26 +0.2 5,328,285 - Pf1N1B4_4824 0.26 -2.5 5,328,287 - Pf1N1B4_4824 0.26 -1.1 5,328,319 + Pf1N1B4_4824 0.29 +0.8 5,328,464 - -1.5 5,328,721 + +1.5 5,328,721 + -0.5 5,328,949 + Pf1N1B4_4824 0.77 -2.1 5,328,973 + Pf1N1B4_4824 0.79 -3.1 5,329,208 - -1.2 5,329,211 - -0.1 5,329,234 + +0.5 5,329,318 - +0.8 5,329,348 - +0.5 5,329,361 - Pf1N1B4_4825 0.11 -1.8 5,329,361 - Pf1N1B4_4825 0.11 -1.1 5,329,361 - Pf1N1B4_4825 0.11 -0.0 5,329,383 + Pf1N1B4_4825 0.13 +0.8 5,329,383 + Pf1N1B4_4825 0.13 +0.9 5,329,383 + Pf1N1B4_4825 0.13 +0.1 5,329,384 - Pf1N1B4_4825 0.13 -0.5 5,329,384 - -0.9 5,329,686 + Pf1N1B4_4825 0.41 +0.4 5,329,695 + Pf1N1B4_4825 0.42 -1.1 5,329,696 - Pf1N1B4_4825 0.42 -0.5 5,329,696 - Pf1N1B4_4825 0.42 +0.4 5,329,732 + Pf1N1B4_4825 0.45 -0.7 5,329,773 + -0.5 5,330,172 + Pf1N1B4_4825 0.85 +0.8 5,330,173 - Pf1N1B4_4825 0.86 -2.1 5,330,229 + +0.4
Or see this region's nucleotide sequence