Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4491 and Pf1N1B4_4492 overlap by 4 nucleotides Pf1N1B4_4492 and Pf1N1B4_4493 overlap by 4 nucleotides Pf1N1B4_4493 and Pf1N1B4_4494 are separated by 36 nucleotides
Pf1N1B4_4491 - ABC transporter permease protein, at 4,954,222 to 4,955,013
_4491
Pf1N1B4_4492 - ABC transporter, ATP-binding protein, at 4,955,010 to 4,955,741
_4492
Pf1N1B4_4493 - FIG00443700: hypothetical protein, at 4,955,738 to 4,956,697
_4493
Pf1N1B4_4494 - hypothetical protein, at 4,956,734 to 4,957,918
_4494
Position (kb)
4955
4956
4957 Strain fitness (log2 ratio)
-2
-1
0
1 at 4954.752 kb on - strand at 4954.820 kb on + strand, within Pf1N1B4_4491 at 4954.821 kb on - strand, within Pf1N1B4_4491 at 4954.838 kb on + strand, within Pf1N1B4_4491 at 4954.838 kb on + strand, within Pf1N1B4_4491 at 4954.839 kb on - strand at 4955.343 kb on - strand, within Pf1N1B4_4492 at 4955.873 kb on - strand, within Pf1N1B4_4493 at 4955.982 kb on + strand, within Pf1N1B4_4493 at 4956.128 kb on + strand, within Pf1N1B4_4493 at 4956.321 kb on - strand, within Pf1N1B4_4493 at 4956.378 kb on + strand, within Pf1N1B4_4493 at 4956.378 kb on + strand at 4956.378 kb on + strand, within Pf1N1B4_4493 at 4956.379 kb on - strand at 4956.379 kb on - strand, within Pf1N1B4_4493 at 4956.379 kb on - strand, within Pf1N1B4_4493 at 4956.379 kb on - strand, within Pf1N1B4_4493 at 4956.379 kb on - strand at 4956.504 kb on + strand, within Pf1N1B4_4493 at 4956.505 kb on - strand, within Pf1N1B4_4493 at 4956.505 kb on - strand, within Pf1N1B4_4493 at 4956.947 kb on - strand, within Pf1N1B4_4494 at 4957.176 kb on + strand, within Pf1N1B4_4494 at 4957.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 4,954,752 - -1.9 4,954,820 + Pf1N1B4_4491 0.76 -0.9 4,954,821 - Pf1N1B4_4491 0.76 +0.1 4,954,838 + Pf1N1B4_4491 0.78 -1.4 4,954,838 + Pf1N1B4_4491 0.78 -0.1 4,954,839 - -0.4 4,955,343 - Pf1N1B4_4492 0.45 -1.4 4,955,873 - Pf1N1B4_4493 0.14 -1.4 4,955,982 + Pf1N1B4_4493 0.25 -1.4 4,956,128 + Pf1N1B4_4493 0.41 -0.7 4,956,321 - Pf1N1B4_4493 0.61 -1.6 4,956,378 + Pf1N1B4_4493 0.67 -0.4 4,956,378 + -1.4 4,956,378 + Pf1N1B4_4493 0.67 -1.4 4,956,379 - -0.4 4,956,379 - Pf1N1B4_4493 0.67 -0.4 4,956,379 - Pf1N1B4_4493 0.67 +0.6 4,956,379 - Pf1N1B4_4493 0.67 -2.5 4,956,379 - +1.6 4,956,504 + Pf1N1B4_4493 0.80 +0.6 4,956,505 - Pf1N1B4_4493 0.80 -1.7 4,956,505 - Pf1N1B4_4493 0.80 -1.4 4,956,947 - Pf1N1B4_4494 0.18 -1.8 4,957,176 + Pf1N1B4_4494 0.37 -1.4 4,957,674 + -0.4
Or see this region's nucleotide sequence