Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3011 and Pf1N1B4_3012 are separated by 165 nucleotides Pf1N1B4_3012 and Pf1N1B4_3013 are separated by 79 nucleotides Pf1N1B4_3013 and Pf1N1B4_3014 are separated by 108 nucleotides
Pf1N1B4_3011 - Tyrosine recombinase XerD, at 3,385,335 to 3,386,231
_3011
Pf1N1B4_3012 - Thiol:disulfide interchange protein DsbC, at 3,386,397 to 3,387,128
_3012
Pf1N1B4_3013 - Homoserine dehydrogenase (EC 1.1.1.3), at 3,387,208 to 3,388,566
_3013
Pf1N1B4_3014 - Threonine synthase (EC 4.2.3.1), at 3,388,675 to 3,390,084
_3014
Position (kb)
3387
3388
3389 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3386.263 kb on - strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.297 kb on + strand at 3386.298 kb on - strand at 3386.298 kb on - strand at 3386.298 kb on - strand at 3386.298 kb on - strand at 3386.298 kb on - strand at 3386.298 kb on - strand at 3386.298 kb on - strand at 3386.298 kb on - strand at 3386.298 kb on - strand at 3386.298 kb on - strand at 3386.304 kb on + strand at 3386.556 kb on + strand, within Pf1N1B4_3012 at 3386.610 kb on + strand, within Pf1N1B4_3012 at 3386.610 kb on + strand, within Pf1N1B4_3012 at 3386.610 kb on + strand, within Pf1N1B4_3012 at 3386.853 kb on + strand, within Pf1N1B4_3012 at 3386.853 kb on + strand, within Pf1N1B4_3012 at 3386.853 kb on + strand, within Pf1N1B4_3012 at 3386.853 kb on + strand, within Pf1N1B4_3012 at 3387.038 kb on + strand, within Pf1N1B4_3012 at 3387.038 kb on + strand, within Pf1N1B4_3012 at 3387.207 kb on + strand at 3388.622 kb on + strand at 3388.629 kb on + strand at 3388.636 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 3,386,263 - -1.0 3,386,297 + +0.0 3,386,297 + +0.4 3,386,297 + +0.0 3,386,297 + +0.4 3,386,297 + +1.0 3,386,297 + +0.6 3,386,297 + +1.0 3,386,297 + -2.0 3,386,297 + +0.9 3,386,297 + +0.5 3,386,297 + +0.6 3,386,297 + +0.3 3,386,297 + +1.2 3,386,297 + -0.4 3,386,297 + +0.9 3,386,297 + -0.8 3,386,297 + +0.8 3,386,298 - +1.9 3,386,298 - +0.8 3,386,298 - +1.0 3,386,298 - -0.5 3,386,298 - +2.2 3,386,298 - -2.0 3,386,298 - +1.4 3,386,298 - -0.4 3,386,298 - +0.6 3,386,298 - +2.0 3,386,304 + -0.5 3,386,556 + Pf1N1B4_3012 0.22 +0.3 3,386,610 + Pf1N1B4_3012 0.29 +0.0 3,386,610 + Pf1N1B4_3012 0.29 -0.5 3,386,610 + Pf1N1B4_3012 0.29 +0.6 3,386,853 + Pf1N1B4_3012 0.62 +0.0 3,386,853 + Pf1N1B4_3012 0.62 +0.0 3,386,853 + Pf1N1B4_3012 0.62 +0.6 3,386,853 + Pf1N1B4_3012 0.62 -0.1 3,387,038 + Pf1N1B4_3012 0.88 -0.5 3,387,038 + Pf1N1B4_3012 0.88 -0.1 3,387,207 + -1.0 3,388,622 + -1.2 3,388,629 + +0.6 3,388,636 + +1.6
Or see this region's nucleotide sequence