Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3013

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3011 and Pf1N1B4_3012 are separated by 165 nucleotidesPf1N1B4_3012 and Pf1N1B4_3013 are separated by 79 nucleotidesPf1N1B4_3013 and Pf1N1B4_3014 are separated by 108 nucleotides Pf1N1B4_3011 - Tyrosine recombinase XerD, at 3,385,335 to 3,386,231 _3011 Pf1N1B4_3012 - Thiol:disulfide interchange protein DsbC, at 3,386,397 to 3,387,128 _3012 Pf1N1B4_3013 - Homoserine dehydrogenase (EC 1.1.1.3), at 3,387,208 to 3,388,566 _3013 Pf1N1B4_3014 - Threonine synthase (EC 4.2.3.1), at 3,388,675 to 3,390,084 _3014 Position (kb) 3387 3388 3389Strain fitness (log2 ratio) -2 -1 0 1 2at 3386.263 kb on - strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.297 kb on + strandat 3386.298 kb on - strandat 3386.298 kb on - strandat 3386.298 kb on - strandat 3386.298 kb on - strandat 3386.298 kb on - strandat 3386.298 kb on - strandat 3386.298 kb on - strandat 3386.298 kb on - strandat 3386.298 kb on - strandat 3386.298 kb on - strandat 3386.304 kb on + strandat 3386.556 kb on + strand, within Pf1N1B4_3012at 3386.610 kb on + strand, within Pf1N1B4_3012at 3386.610 kb on + strand, within Pf1N1B4_3012at 3386.610 kb on + strand, within Pf1N1B4_3012at 3386.853 kb on + strand, within Pf1N1B4_3012at 3386.853 kb on + strand, within Pf1N1B4_3012at 3386.853 kb on + strand, within Pf1N1B4_3012at 3386.853 kb on + strand, within Pf1N1B4_3012at 3387.038 kb on + strand, within Pf1N1B4_3012at 3387.038 kb on + strand, within Pf1N1B4_3012at 3387.207 kb on + strandat 3388.622 kb on + strandat 3388.629 kb on + strandat 3388.636 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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3,386,263 - -1.0
3,386,297 + +0.0
3,386,297 + +0.4
3,386,297 + +0.0
3,386,297 + +0.4
3,386,297 + +1.0
3,386,297 + +0.6
3,386,297 + +1.0
3,386,297 + -2.0
3,386,297 + +0.9
3,386,297 + +0.5
3,386,297 + +0.6
3,386,297 + +0.3
3,386,297 + +1.2
3,386,297 + -0.4
3,386,297 + +0.9
3,386,297 + -0.8
3,386,297 + +0.8
3,386,298 - +1.9
3,386,298 - +0.8
3,386,298 - +1.0
3,386,298 - -0.5
3,386,298 - +2.2
3,386,298 - -2.0
3,386,298 - +1.4
3,386,298 - -0.4
3,386,298 - +0.6
3,386,298 - +2.0
3,386,304 + -0.5
3,386,556 + Pf1N1B4_3012 0.22 +0.3
3,386,610 + Pf1N1B4_3012 0.29 +0.0
3,386,610 + Pf1N1B4_3012 0.29 -0.5
3,386,610 + Pf1N1B4_3012 0.29 +0.6
3,386,853 + Pf1N1B4_3012 0.62 +0.0
3,386,853 + Pf1N1B4_3012 0.62 +0.0
3,386,853 + Pf1N1B4_3012 0.62 +0.6
3,386,853 + Pf1N1B4_3012 0.62 -0.1
3,387,038 + Pf1N1B4_3012 0.88 -0.5
3,387,038 + Pf1N1B4_3012 0.88 -0.1
3,387,207 + -1.0
3,388,622 + -1.2
3,388,629 + +0.6
3,388,636 + +1.6

Or see this region's nucleotide sequence