Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1525 and Pf1N1B4_1526 are separated by 35 nucleotides Pf1N1B4_1526 and Pf1N1B4_1527 are separated by 369 nucleotides
Pf1N1B4_1525 - hypothetical protein, at 1,757,191 to 1,757,448
_1525
Pf1N1B4_1526 - hypothetical protein, at 1,757,484 to 1,757,612
_1526
Pf1N1B4_1527 - Queuosine Biosynthesis QueC ATPase, at 1,757,982 to 1,758,671
_1527
Position (kb)
1757
1758
1759 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1757.049 kb on - strand at 1757.049 kb on - strand at 1757.056 kb on + strand at 1757.057 kb on - strand at 1757.057 kb on - strand at 1757.057 kb on - strand at 1757.057 kb on - strand at 1757.057 kb on - strand at 1757.236 kb on + strand, within Pf1N1B4_1525 at 1757.236 kb on + strand, within Pf1N1B4_1525 at 1757.236 kb on + strand, within Pf1N1B4_1525 at 1757.236 kb on + strand, within Pf1N1B4_1525 at 1757.236 kb on + strand, within Pf1N1B4_1525 at 1757.236 kb on + strand, within Pf1N1B4_1525 at 1757.236 kb on + strand, within Pf1N1B4_1525 at 1757.236 kb on + strand, within Pf1N1B4_1525 at 1757.237 kb on - strand, within Pf1N1B4_1525 at 1757.237 kb on - strand, within Pf1N1B4_1525 at 1757.237 kb on - strand, within Pf1N1B4_1525 at 1757.237 kb on - strand, within Pf1N1B4_1525 at 1757.237 kb on - strand, within Pf1N1B4_1525 at 1757.240 kb on + strand, within Pf1N1B4_1525 at 1757.241 kb on - strand, within Pf1N1B4_1525 at 1757.368 kb on + strand, within Pf1N1B4_1525 at 1757.369 kb on - strand, within Pf1N1B4_1525 at 1757.369 kb on - strand, within Pf1N1B4_1525 at 1757.369 kb on - strand, within Pf1N1B4_1525 at 1757.369 kb on - strand, within Pf1N1B4_1525 at 1757.396 kb on + strand, within Pf1N1B4_1525 at 1757.396 kb on + strand, within Pf1N1B4_1525 at 1757.396 kb on + strand, within Pf1N1B4_1525 at 1757.396 kb on + strand, within Pf1N1B4_1525 at 1757.397 kb on - strand, within Pf1N1B4_1525 at 1757.397 kb on - strand, within Pf1N1B4_1525 at 1757.397 kb on - strand, within Pf1N1B4_1525 at 1757.397 kb on - strand, within Pf1N1B4_1525 at 1757.397 kb on - strand, within Pf1N1B4_1525 at 1757.432 kb on + strand at 1757.432 kb on + strand at 1757.432 kb on + strand at 1757.432 kb on + strand at 1757.433 kb on - strand at 1757.610 kb on + strand at 1757.610 kb on + strand at 1757.610 kb on + strand at 1757.636 kb on - strand at 1757.636 kb on - strand at 1757.636 kb on - strand at 1757.636 kb on - strand at 1757.818 kb on + strand at 1757.818 kb on + strand at 1757.820 kb on + strand at 1757.820 kb on + strand at 1757.821 kb on - strand at 1757.921 kb on + strand at 1757.922 kb on - strand at 1757.988 kb on - strand at 1758.312 kb on + strand, within Pf1N1B4_1527 at 1758.313 kb on - strand, within Pf1N1B4_1527 at 1758.440 kb on + strand, within Pf1N1B4_1527 at 1758.507 kb on + strand, within Pf1N1B4_1527 at 1758.507 kb on + strand, within Pf1N1B4_1527 at 1758.524 kb on - strand, within Pf1N1B4_1527 at 1758.536 kb on + strand, within Pf1N1B4_1527 at 1758.557 kb on + strand, within Pf1N1B4_1527 at 1758.557 kb on + strand, within Pf1N1B4_1527 at 1758.613 kb on + strand at 1758.697 kb on + strand at 1758.826 kb on - strand at 1758.840 kb on - strand at 1758.965 kb on + strand at 1759.044 kb on + strand at 1759.067 kb on + strand at 1759.068 kb on - strand at 1759.068 kb on - strand at 1759.138 kb on + strand at 1759.160 kb on - strand at 1759.212 kb on - strand at 1759.292 kb on + strand at 1759.292 kb on + strand at 1759.292 kb on + strand at 1759.292 kb on + strand at 1759.292 kb on + strand at 1759.342 kb on - strand at 1759.346 kb on - strand at 1759.346 kb on - strand at 1759.514 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 1,757,049 - -0.8 1,757,049 - -2.1 1,757,056 + -0.8 1,757,057 - -0.8 1,757,057 - -0.8 1,757,057 - +1.8 1,757,057 - -0.4 1,757,057 - +1.2 1,757,236 + Pf1N1B4_1525 0.17 +0.0 1,757,236 + Pf1N1B4_1525 0.17 +0.2 1,757,236 + Pf1N1B4_1525 0.17 +1.0 1,757,236 + Pf1N1B4_1525 0.17 +0.5 1,757,236 + Pf1N1B4_1525 0.17 -0.8 1,757,236 + Pf1N1B4_1525 0.17 +0.2 1,757,236 + Pf1N1B4_1525 0.17 +1.2 1,757,236 + Pf1N1B4_1525 0.17 -0.4 1,757,237 - Pf1N1B4_1525 0.18 -0.3 1,757,237 - Pf1N1B4_1525 0.18 +0.0 1,757,237 - Pf1N1B4_1525 0.18 -0.4 1,757,237 - Pf1N1B4_1525 0.18 +1.2 1,757,237 - Pf1N1B4_1525 0.18 +1.4 1,757,240 + Pf1N1B4_1525 0.19 -0.2 1,757,241 - Pf1N1B4_1525 0.19 +0.8 1,757,368 + Pf1N1B4_1525 0.69 +0.2 1,757,369 - Pf1N1B4_1525 0.69 -0.5 1,757,369 - Pf1N1B4_1525 0.69 +0.0 1,757,369 - Pf1N1B4_1525 0.69 +0.6 1,757,369 - Pf1N1B4_1525 0.69 +1.8 1,757,396 + Pf1N1B4_1525 0.79 +2.2 1,757,396 + Pf1N1B4_1525 0.79 -0.8 1,757,396 + Pf1N1B4_1525 0.79 -1.9 1,757,396 + Pf1N1B4_1525 0.79 +0.5 1,757,397 - Pf1N1B4_1525 0.80 -1.4 1,757,397 - Pf1N1B4_1525 0.80 +0.2 1,757,397 - Pf1N1B4_1525 0.80 -0.5 1,757,397 - Pf1N1B4_1525 0.80 -0.3 1,757,397 - Pf1N1B4_1525 0.80 +0.6 1,757,432 + -0.3 1,757,432 + -0.3 1,757,432 + +0.8 1,757,432 + -2.4 1,757,433 - -0.0 1,757,610 + +0.8 1,757,610 + -0.1 1,757,610 + -0.8 1,757,636 - +0.8 1,757,636 - -1.8 1,757,636 - +0.1 1,757,636 - -0.3 1,757,818 + +0.6 1,757,818 + +0.5 1,757,820 + +0.6 1,757,820 + +0.6 1,757,821 - -0.3 1,757,921 + -0.3 1,757,922 - +2.2 1,757,988 - -1.4 1,758,312 + Pf1N1B4_1527 0.48 -1.4 1,758,313 - Pf1N1B4_1527 0.48 -0.8 1,758,440 + Pf1N1B4_1527 0.66 -1.2 1,758,507 + Pf1N1B4_1527 0.76 -1.1 1,758,507 + Pf1N1B4_1527 0.76 -0.8 1,758,524 - Pf1N1B4_1527 0.79 +0.2 1,758,536 + Pf1N1B4_1527 0.80 -2.1 1,758,557 + Pf1N1B4_1527 0.83 -0.8 1,758,557 + Pf1N1B4_1527 0.83 +0.6 1,758,613 + +0.5 1,758,697 + +0.4 1,758,826 - -0.1 1,758,840 - +0.2 1,758,965 + -1.4 1,759,044 + +1.2 1,759,067 + -0.6 1,759,068 - -1.4 1,759,068 - +0.2 1,759,138 + -2.6 1,759,160 - +0.2 1,759,212 - +1.2 1,759,292 + +0.2 1,759,292 + +0.8 1,759,292 + +0.2 1,759,292 + -0.6 1,759,292 + -0.8 1,759,342 - -2.1 1,759,346 - +2.2 1,759,346 - -2.4 1,759,514 - +0.4
Or see this region's nucleotide sequence