Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1506 and Pf1N1B4_1507 are separated by 164 nucleotides Pf1N1B4_1507 and Pf1N1B4_1508 overlap by 4 nucleotides Pf1N1B4_1508 and Pf1N1B4_1509 overlap by 20 nucleotides
Pf1N1B4_1506 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-), at 1,738,249 to 1,739,550
_1506
Pf1N1B4_1507 - FIG143263: Glycosyl transferase, at 1,739,715 to 1,740,449
_1507
Pf1N1B4_1508 - Lysophospholipid acyltransferase, at 1,740,446 to 1,741,393
_1508
Pf1N1B4_1509 - Putative histidine ammonia-lyase protein, at 1,741,374 to 1,742,918
_1509
Position (kb)
1740
1741
1742 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1739.479 kb on + strand at 1739.480 kb on - strand at 1739.480 kb on - strand at 1739.480 kb on - strand at 1739.529 kb on - strand at 1739.566 kb on - strand at 1739.624 kb on - strand at 1739.651 kb on - strand at 1739.651 kb on - strand at 1739.651 kb on - strand at 1739.721 kb on - strand at 1739.745 kb on + strand at 1739.745 kb on + strand at 1739.745 kb on + strand at 1739.745 kb on + strand at 1739.746 kb on - strand at 1739.746 kb on - strand at 1739.880 kb on + strand, within Pf1N1B4_1507 at 1739.880 kb on + strand, within Pf1N1B4_1507 at 1740.012 kb on - strand, within Pf1N1B4_1507 at 1740.073 kb on - strand, within Pf1N1B4_1507 at 1740.101 kb on - strand, within Pf1N1B4_1507 at 1740.101 kb on - strand, within Pf1N1B4_1507 at 1740.102 kb on + strand at 1740.103 kb on - strand, within Pf1N1B4_1507 at 1740.103 kb on - strand, within Pf1N1B4_1507 at 1740.103 kb on - strand, within Pf1N1B4_1507 at 1740.187 kb on - strand, within Pf1N1B4_1507 at 1740.240 kb on - strand, within Pf1N1B4_1507 at 1740.240 kb on - strand, within Pf1N1B4_1507 at 1740.364 kb on + strand, within Pf1N1B4_1507 at 1740.364 kb on + strand, within Pf1N1B4_1507 at 1740.365 kb on - strand, within Pf1N1B4_1507 at 1740.365 kb on - strand, within Pf1N1B4_1507 at 1740.365 kb on - strand, within Pf1N1B4_1507 at 1740.365 kb on - strand at 1740.569 kb on + strand, within Pf1N1B4_1508 at 1740.585 kb on - strand, within Pf1N1B4_1508 at 1740.585 kb on - strand, within Pf1N1B4_1508 at 1740.802 kb on + strand, within Pf1N1B4_1508 at 1740.802 kb on + strand, within Pf1N1B4_1508 at 1740.803 kb on - strand, within Pf1N1B4_1508 at 1740.803 kb on - strand, within Pf1N1B4_1508 at 1740.834 kb on + strand at 1741.320 kb on - strand at 1741.356 kb on - strand at 1741.554 kb on + strand, within Pf1N1B4_1509 at 1741.554 kb on + strand, within Pf1N1B4_1509 at 1741.554 kb on + strand, within Pf1N1B4_1509 at 1741.555 kb on - strand, within Pf1N1B4_1509 at 1741.555 kb on - strand, within Pf1N1B4_1509 at 1741.555 kb on - strand, within Pf1N1B4_1509 at 1741.555 kb on - strand, within Pf1N1B4_1509 at 1741.555 kb on - strand, within Pf1N1B4_1509 at 1741.635 kb on + strand, within Pf1N1B4_1509 at 1741.635 kb on + strand, within Pf1N1B4_1509 at 1741.635 kb on + strand, within Pf1N1B4_1509 at 1741.635 kb on + strand, within Pf1N1B4_1509 at 1741.635 kb on + strand, within Pf1N1B4_1509 at 1741.635 kb on + strand, within Pf1N1B4_1509 at 1741.635 kb on + strand, within Pf1N1B4_1509 at 1741.635 kb on + strand, within Pf1N1B4_1509 at 1741.636 kb on - strand, within Pf1N1B4_1509 at 1741.636 kb on - strand, within Pf1N1B4_1509 at 1741.636 kb on - strand, within Pf1N1B4_1509 at 1741.636 kb on - strand, within Pf1N1B4_1509 at 1741.636 kb on - strand at 1741.636 kb on - strand, within Pf1N1B4_1509 at 1741.636 kb on - strand, within Pf1N1B4_1509 at 1741.638 kb on - strand, within Pf1N1B4_1509 at 1741.638 kb on - strand, within Pf1N1B4_1509 at 1741.638 kb on - strand, within Pf1N1B4_1509 at 1741.638 kb on - strand, within Pf1N1B4_1509 at 1741.638 kb on - strand, within Pf1N1B4_1509 at 1741.780 kb on - strand, within Pf1N1B4_1509 at 1741.848 kb on + strand, within Pf1N1B4_1509 at 1741.849 kb on - strand, within Pf1N1B4_1509 at 1741.849 kb on - strand, within Pf1N1B4_1509 at 1741.949 kb on - strand, within Pf1N1B4_1509 at 1742.034 kb on + strand, within Pf1N1B4_1509 at 1742.035 kb on - strand, within Pf1N1B4_1509 at 1742.069 kb on + strand, within Pf1N1B4_1509 at 1742.069 kb on + strand, within Pf1N1B4_1509 at 1742.069 kb on + strand, within Pf1N1B4_1509 at 1742.070 kb on - strand, within Pf1N1B4_1509 at 1742.070 kb on - strand, within Pf1N1B4_1509 at 1742.070 kb on - strand, within Pf1N1B4_1509 at 1742.070 kb on - strand, within Pf1N1B4_1509 at 1742.070 kb on - strand, within Pf1N1B4_1509 at 1742.070 kb on - strand, within Pf1N1B4_1509 at 1742.075 kb on - strand, within Pf1N1B4_1509 at 1742.075 kb on - strand, within Pf1N1B4_1509
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 1,739,479 + +0.2 1,739,480 - -1.4 1,739,480 - -0.4 1,739,480 - -1.1 1,739,529 - +0.1 1,739,566 - -0.2 1,739,624 - -0.4 1,739,651 - -0.4 1,739,651 - +0.2 1,739,651 - +0.6 1,739,721 - +0.2 1,739,745 + -0.5 1,739,745 + -0.4 1,739,745 + +0.2 1,739,745 + -0.1 1,739,746 - +2.0 1,739,746 - -0.8 1,739,880 + Pf1N1B4_1507 0.22 +1.3 1,739,880 + Pf1N1B4_1507 0.22 +0.5 1,740,012 - Pf1N1B4_1507 0.40 -0.5 1,740,073 - Pf1N1B4_1507 0.49 -0.8 1,740,101 - Pf1N1B4_1507 0.53 -0.4 1,740,101 - Pf1N1B4_1507 0.53 -0.8 1,740,102 + -0.8 1,740,103 - Pf1N1B4_1507 0.53 -0.1 1,740,103 - Pf1N1B4_1507 0.53 -0.2 1,740,103 - Pf1N1B4_1507 0.53 -0.3 1,740,187 - Pf1N1B4_1507 0.64 -0.0 1,740,240 - Pf1N1B4_1507 0.71 -0.5 1,740,240 - Pf1N1B4_1507 0.71 +2.0 1,740,364 + Pf1N1B4_1507 0.88 -2.1 1,740,364 + Pf1N1B4_1507 0.88 +2.8 1,740,365 - Pf1N1B4_1507 0.88 -0.8 1,740,365 - Pf1N1B4_1507 0.88 +1.2 1,740,365 - Pf1N1B4_1507 0.88 -0.9 1,740,365 - +0.2 1,740,569 + Pf1N1B4_1508 0.13 +0.2 1,740,585 - Pf1N1B4_1508 0.15 -1.6 1,740,585 - Pf1N1B4_1508 0.15 -0.8 1,740,802 + Pf1N1B4_1508 0.38 -0.0 1,740,802 + Pf1N1B4_1508 0.38 -2.4 1,740,803 - Pf1N1B4_1508 0.38 -0.4 1,740,803 - Pf1N1B4_1508 0.38 -0.8 1,740,834 + -0.8 1,741,320 - -0.5 1,741,356 - +0.8 1,741,554 + Pf1N1B4_1509 0.12 -0.8 1,741,554 + Pf1N1B4_1509 0.12 +1.4 1,741,554 + Pf1N1B4_1509 0.12 -0.7 1,741,555 - Pf1N1B4_1509 0.12 -0.0 1,741,555 - Pf1N1B4_1509 0.12 -0.5 1,741,555 - Pf1N1B4_1509 0.12 -1.4 1,741,555 - Pf1N1B4_1509 0.12 +0.4 1,741,555 - Pf1N1B4_1509 0.12 -0.8 1,741,635 + Pf1N1B4_1509 0.17 -1.8 1,741,635 + Pf1N1B4_1509 0.17 +1.8 1,741,635 + Pf1N1B4_1509 0.17 -2.6 1,741,635 + Pf1N1B4_1509 0.17 -0.2 1,741,635 + Pf1N1B4_1509 0.17 -1.4 1,741,635 + Pf1N1B4_1509 0.17 +1.2 1,741,635 + Pf1N1B4_1509 0.17 -1.2 1,741,635 + Pf1N1B4_1509 0.17 +1.4 1,741,636 - Pf1N1B4_1509 0.17 -2.1 1,741,636 - Pf1N1B4_1509 0.17 -0.2 1,741,636 - Pf1N1B4_1509 0.17 -0.4 1,741,636 - Pf1N1B4_1509 0.17 -0.2 1,741,636 - +1.2 1,741,636 - Pf1N1B4_1509 0.17 -0.1 1,741,636 - Pf1N1B4_1509 0.17 -0.2 1,741,638 - Pf1N1B4_1509 0.17 +0.8 1,741,638 - Pf1N1B4_1509 0.17 +0.6 1,741,638 - Pf1N1B4_1509 0.17 +0.4 1,741,638 - Pf1N1B4_1509 0.17 +0.4 1,741,638 - Pf1N1B4_1509 0.17 +3.0 1,741,780 - Pf1N1B4_1509 0.26 +0.8 1,741,848 + Pf1N1B4_1509 0.31 -0.2 1,741,849 - Pf1N1B4_1509 0.31 +0.1 1,741,849 - Pf1N1B4_1509 0.31 -0.5 1,741,949 - Pf1N1B4_1509 0.37 -1.4 1,742,034 + Pf1N1B4_1509 0.43 -0.5 1,742,035 - Pf1N1B4_1509 0.43 -0.8 1,742,069 + Pf1N1B4_1509 0.45 -0.8 1,742,069 + Pf1N1B4_1509 0.45 -1.2 1,742,069 + Pf1N1B4_1509 0.45 +1.2 1,742,070 - Pf1N1B4_1509 0.45 +1.5 1,742,070 - Pf1N1B4_1509 0.45 -0.5 1,742,070 - Pf1N1B4_1509 0.45 +0.2 1,742,070 - Pf1N1B4_1509 0.45 -0.8 1,742,070 - Pf1N1B4_1509 0.45 +1.2 1,742,070 - Pf1N1B4_1509 0.45 -0.0 1,742,075 - Pf1N1B4_1509 0.45 +0.2 1,742,075 - Pf1N1B4_1509 0.45 -0.8
Or see this region's nucleotide sequence