Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1508

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1506 and Pf1N1B4_1507 are separated by 164 nucleotidesPf1N1B4_1507 and Pf1N1B4_1508 overlap by 4 nucleotidesPf1N1B4_1508 and Pf1N1B4_1509 overlap by 20 nucleotides Pf1N1B4_1506 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-), at 1,738,249 to 1,739,550 _1506 Pf1N1B4_1507 - FIG143263: Glycosyl transferase, at 1,739,715 to 1,740,449 _1507 Pf1N1B4_1508 - Lysophospholipid acyltransferase, at 1,740,446 to 1,741,393 _1508 Pf1N1B4_1509 - Putative histidine ammonia-lyase protein, at 1,741,374 to 1,742,918 _1509 Position (kb) 1740 1741 1742Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1739.479 kb on + strandat 1739.480 kb on - strandat 1739.480 kb on - strandat 1739.480 kb on - strandat 1739.529 kb on - strandat 1739.566 kb on - strandat 1739.624 kb on - strandat 1739.651 kb on - strandat 1739.651 kb on - strandat 1739.651 kb on - strandat 1739.721 kb on - strandat 1739.745 kb on + strandat 1739.745 kb on + strandat 1739.745 kb on + strandat 1739.745 kb on + strandat 1739.746 kb on - strandat 1739.746 kb on - strandat 1739.880 kb on + strand, within Pf1N1B4_1507at 1739.880 kb on + strand, within Pf1N1B4_1507at 1740.012 kb on - strand, within Pf1N1B4_1507at 1740.073 kb on - strand, within Pf1N1B4_1507at 1740.101 kb on - strand, within Pf1N1B4_1507at 1740.101 kb on - strand, within Pf1N1B4_1507at 1740.102 kb on + strandat 1740.103 kb on - strand, within Pf1N1B4_1507at 1740.103 kb on - strand, within Pf1N1B4_1507at 1740.103 kb on - strand, within Pf1N1B4_1507at 1740.187 kb on - strand, within Pf1N1B4_1507at 1740.240 kb on - strand, within Pf1N1B4_1507at 1740.240 kb on - strand, within Pf1N1B4_1507at 1740.364 kb on + strand, within Pf1N1B4_1507at 1740.364 kb on + strand, within Pf1N1B4_1507at 1740.365 kb on - strand, within Pf1N1B4_1507at 1740.365 kb on - strand, within Pf1N1B4_1507at 1740.365 kb on - strand, within Pf1N1B4_1507at 1740.365 kb on - strandat 1740.569 kb on + strand, within Pf1N1B4_1508at 1740.585 kb on - strand, within Pf1N1B4_1508at 1740.585 kb on - strand, within Pf1N1B4_1508at 1740.802 kb on + strand, within Pf1N1B4_1508at 1740.802 kb on + strand, within Pf1N1B4_1508at 1740.803 kb on - strand, within Pf1N1B4_1508at 1740.803 kb on - strand, within Pf1N1B4_1508at 1740.834 kb on + strandat 1741.320 kb on - strandat 1741.356 kb on - strandat 1741.554 kb on + strand, within Pf1N1B4_1509at 1741.554 kb on + strand, within Pf1N1B4_1509at 1741.554 kb on + strand, within Pf1N1B4_1509at 1741.555 kb on - strand, within Pf1N1B4_1509at 1741.555 kb on - strand, within Pf1N1B4_1509at 1741.555 kb on - strand, within Pf1N1B4_1509at 1741.555 kb on - strand, within Pf1N1B4_1509at 1741.555 kb on - strand, within Pf1N1B4_1509at 1741.635 kb on + strand, within Pf1N1B4_1509at 1741.635 kb on + strand, within Pf1N1B4_1509at 1741.635 kb on + strand, within Pf1N1B4_1509at 1741.635 kb on + strand, within Pf1N1B4_1509at 1741.635 kb on + strand, within Pf1N1B4_1509at 1741.635 kb on + strand, within Pf1N1B4_1509at 1741.635 kb on + strand, within Pf1N1B4_1509at 1741.635 kb on + strand, within Pf1N1B4_1509at 1741.636 kb on - strand, within Pf1N1B4_1509at 1741.636 kb on - strand, within Pf1N1B4_1509at 1741.636 kb on - strand, within Pf1N1B4_1509at 1741.636 kb on - strand, within Pf1N1B4_1509at 1741.636 kb on - strandat 1741.636 kb on - strand, within Pf1N1B4_1509at 1741.636 kb on - strand, within Pf1N1B4_1509at 1741.638 kb on - strand, within Pf1N1B4_1509at 1741.638 kb on - strand, within Pf1N1B4_1509at 1741.638 kb on - strand, within Pf1N1B4_1509at 1741.638 kb on - strand, within Pf1N1B4_1509at 1741.638 kb on - strand, within Pf1N1B4_1509at 1741.780 kb on - strand, within Pf1N1B4_1509at 1741.848 kb on + strand, within Pf1N1B4_1509at 1741.849 kb on - strand, within Pf1N1B4_1509at 1741.849 kb on - strand, within Pf1N1B4_1509at 1741.949 kb on - strand, within Pf1N1B4_1509at 1742.034 kb on + strand, within Pf1N1B4_1509at 1742.035 kb on - strand, within Pf1N1B4_1509at 1742.069 kb on + strand, within Pf1N1B4_1509at 1742.069 kb on + strand, within Pf1N1B4_1509at 1742.069 kb on + strand, within Pf1N1B4_1509at 1742.070 kb on - strand, within Pf1N1B4_1509at 1742.070 kb on - strand, within Pf1N1B4_1509at 1742.070 kb on - strand, within Pf1N1B4_1509at 1742.070 kb on - strand, within Pf1N1B4_1509at 1742.070 kb on - strand, within Pf1N1B4_1509at 1742.070 kb on - strand, within Pf1N1B4_1509at 1742.075 kb on - strand, within Pf1N1B4_1509at 1742.075 kb on - strand, within Pf1N1B4_1509

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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1,739,479 + +0.2
1,739,480 - -1.4
1,739,480 - -0.4
1,739,480 - -1.1
1,739,529 - +0.1
1,739,566 - -0.2
1,739,624 - -0.4
1,739,651 - -0.4
1,739,651 - +0.2
1,739,651 - +0.6
1,739,721 - +0.2
1,739,745 + -0.5
1,739,745 + -0.4
1,739,745 + +0.2
1,739,745 + -0.1
1,739,746 - +2.0
1,739,746 - -0.8
1,739,880 + Pf1N1B4_1507 0.22 +1.3
1,739,880 + Pf1N1B4_1507 0.22 +0.5
1,740,012 - Pf1N1B4_1507 0.40 -0.5
1,740,073 - Pf1N1B4_1507 0.49 -0.8
1,740,101 - Pf1N1B4_1507 0.53 -0.4
1,740,101 - Pf1N1B4_1507 0.53 -0.8
1,740,102 + -0.8
1,740,103 - Pf1N1B4_1507 0.53 -0.1
1,740,103 - Pf1N1B4_1507 0.53 -0.2
1,740,103 - Pf1N1B4_1507 0.53 -0.3
1,740,187 - Pf1N1B4_1507 0.64 -0.0
1,740,240 - Pf1N1B4_1507 0.71 -0.5
1,740,240 - Pf1N1B4_1507 0.71 +2.0
1,740,364 + Pf1N1B4_1507 0.88 -2.1
1,740,364 + Pf1N1B4_1507 0.88 +2.8
1,740,365 - Pf1N1B4_1507 0.88 -0.8
1,740,365 - Pf1N1B4_1507 0.88 +1.2
1,740,365 - Pf1N1B4_1507 0.88 -0.9
1,740,365 - +0.2
1,740,569 + Pf1N1B4_1508 0.13 +0.2
1,740,585 - Pf1N1B4_1508 0.15 -1.6
1,740,585 - Pf1N1B4_1508 0.15 -0.8
1,740,802 + Pf1N1B4_1508 0.38 -0.0
1,740,802 + Pf1N1B4_1508 0.38 -2.4
1,740,803 - Pf1N1B4_1508 0.38 -0.4
1,740,803 - Pf1N1B4_1508 0.38 -0.8
1,740,834 + -0.8
1,741,320 - -0.5
1,741,356 - +0.8
1,741,554 + Pf1N1B4_1509 0.12 -0.8
1,741,554 + Pf1N1B4_1509 0.12 +1.4
1,741,554 + Pf1N1B4_1509 0.12 -0.7
1,741,555 - Pf1N1B4_1509 0.12 -0.0
1,741,555 - Pf1N1B4_1509 0.12 -0.5
1,741,555 - Pf1N1B4_1509 0.12 -1.4
1,741,555 - Pf1N1B4_1509 0.12 +0.4
1,741,555 - Pf1N1B4_1509 0.12 -0.8
1,741,635 + Pf1N1B4_1509 0.17 -1.8
1,741,635 + Pf1N1B4_1509 0.17 +1.8
1,741,635 + Pf1N1B4_1509 0.17 -2.6
1,741,635 + Pf1N1B4_1509 0.17 -0.2
1,741,635 + Pf1N1B4_1509 0.17 -1.4
1,741,635 + Pf1N1B4_1509 0.17 +1.2
1,741,635 + Pf1N1B4_1509 0.17 -1.2
1,741,635 + Pf1N1B4_1509 0.17 +1.4
1,741,636 - Pf1N1B4_1509 0.17 -2.1
1,741,636 - Pf1N1B4_1509 0.17 -0.2
1,741,636 - Pf1N1B4_1509 0.17 -0.4
1,741,636 - Pf1N1B4_1509 0.17 -0.2
1,741,636 - +1.2
1,741,636 - Pf1N1B4_1509 0.17 -0.1
1,741,636 - Pf1N1B4_1509 0.17 -0.2
1,741,638 - Pf1N1B4_1509 0.17 +0.8
1,741,638 - Pf1N1B4_1509 0.17 +0.6
1,741,638 - Pf1N1B4_1509 0.17 +0.4
1,741,638 - Pf1N1B4_1509 0.17 +0.4
1,741,638 - Pf1N1B4_1509 0.17 +3.0
1,741,780 - Pf1N1B4_1509 0.26 +0.8
1,741,848 + Pf1N1B4_1509 0.31 -0.2
1,741,849 - Pf1N1B4_1509 0.31 +0.1
1,741,849 - Pf1N1B4_1509 0.31 -0.5
1,741,949 - Pf1N1B4_1509 0.37 -1.4
1,742,034 + Pf1N1B4_1509 0.43 -0.5
1,742,035 - Pf1N1B4_1509 0.43 -0.8
1,742,069 + Pf1N1B4_1509 0.45 -0.8
1,742,069 + Pf1N1B4_1509 0.45 -1.2
1,742,069 + Pf1N1B4_1509 0.45 +1.2
1,742,070 - Pf1N1B4_1509 0.45 +1.5
1,742,070 - Pf1N1B4_1509 0.45 -0.5
1,742,070 - Pf1N1B4_1509 0.45 +0.2
1,742,070 - Pf1N1B4_1509 0.45 -0.8
1,742,070 - Pf1N1B4_1509 0.45 +1.2
1,742,070 - Pf1N1B4_1509 0.45 -0.0
1,742,075 - Pf1N1B4_1509 0.45 +0.2
1,742,075 - Pf1N1B4_1509 0.45 -0.8

Or see this region's nucleotide sequence