Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08725

Experiment: Formate deepwell acetate and vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08720 and MMP_RS09070 are separated by 89 nucleotidesMMP_RS09070 and MMP_RS08725 are separated by 15 nucleotidesMMP_RS08725 and MMP_RS08730 are separated by 41 nucleotides MMP_RS08720: MMP_RS08720 - 4Fe-4S binding protein, at 1,632,705 to 1,633,892 _RS08720 MMP_RS09070: MMP_RS09070 - F420 non-reducing hydrogenase subunit, at 1,633,982 to 1,634,116 _RS09070 MMP_RS08725: MMP_RS08725 - Ni/Fe hydrogenase subunit alpha, at 1,634,132 to 1,635,388 _RS08725 MMP_RS08730: MMP_RS08730 - F420-non-reducing hydrogenase subunit, at 1,635,430 to 1,636,296 _RS08730 Position (kb) 1634 1635 1636Strain fitness (log2 ratio) -2 -1 0 1at 1633.411 kb on + strand, within MMP_RS08720at 1633.412 kb on - strand, within MMP_RS08720at 1633.668 kb on - strand, within MMP_RS08720at 1633.746 kb on - strand, within MMP_RS08720at 1634.354 kb on - strand, within MMP_RS08725at 1634.721 kb on - strand, within MMP_RS08725at 1635.324 kb on + strandat 1635.424 kb on + strandat 1635.892 kb on + strandat 1635.999 kb on + strandat 1636.112 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate deepwell acetate and vitamin FREE
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1,633,411 + MMP_RS08720 0.59 -1.4
1,633,412 - MMP_RS08720 0.60 -1.8
1,633,668 - MMP_RS08720 0.81 -1.0
1,633,746 - MMP_RS08720 0.88 -1.5
1,634,354 - MMP_RS08725 0.18 -0.4
1,634,721 - MMP_RS08725 0.47 -1.4
1,635,324 + +0.0
1,635,424 + -1.2
1,635,892 + -1.1
1,635,999 + -1.4
1,636,112 + -0.7

Or see this region's nucleotide sequence