Experiment: Formate deepwell acetate and vitamin FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05440 and MMP_RS05445 are separated by 47 nucleotides MMP_RS05445 and MMP_RS05450 are separated by 35 nucleotides MMP_RS05450 and MMP_RS05455 are separated by 131 nucleotides MMP_RS05455 and MMP_RS05460 are separated by 22 nucleotides
MMP_RS05440: MMP_RS05440 - winged helix-turn-helix transcriptional regulator, at 1,043,791 to 1,044,585
_RS05440
MMP_RS05445: MMP_RS05445 - CoB--CoM heterodisulfide reductase subunit B, at 1,044,633 to 1,045,514
_RS05445
MMP_RS05450: MMP_RS05450 - CoB--CoM heterodisulfide reductase subunit C, at 1,045,550 to 1,046,104
_RS05450
MMP_RS05455: MMP_RS05455 - DUF167 domain-containing protein, at 1,046,236 to 1,046,541
_RS05455
MMP_RS05460: MMP_RS05460 - YcaO-related McrA-glycine thioamidation protein, at 1,046,564 to 1,047,766
_RS05460
Position (kb)
1045
1046
1047 Strain fitness (log2 ratio)
-1
0
1 at 1044.552 kb on + strand at 1044.552 kb on + strand at 1044.552 kb on + strand at 1044.588 kb on + strand at 1044.634 kb on - strand at 1044.654 kb on - strand at 1044.655 kb on + strand at 1044.671 kb on - strand at 1044.678 kb on - strand at 1044.742 kb on + strand, within MMP_RS05445 at 1044.758 kb on + strand, within MMP_RS05445 at 1044.768 kb on - strand, within MMP_RS05445 at 1044.825 kb on - strand, within MMP_RS05445 at 1044.825 kb on - strand, within MMP_RS05445 at 1044.825 kb on - strand, within MMP_RS05445 at 1044.826 kb on + strand, within MMP_RS05445 at 1044.826 kb on + strand, within MMP_RS05445 at 1044.888 kb on - strand, within MMP_RS05445 at 1044.948 kb on + strand, within MMP_RS05445 at 1044.955 kb on - strand, within MMP_RS05445 at 1044.955 kb on - strand, within MMP_RS05445 at 1045.136 kb on + strand, within MMP_RS05445 at 1045.178 kb on + strand, within MMP_RS05445 at 1045.321 kb on + strand, within MMP_RS05445 at 1045.508 kb on + strand at 1045.538 kb on + strand at 1045.706 kb on + strand, within MMP_RS05450 at 1045.746 kb on - strand, within MMP_RS05450 at 1045.747 kb on + strand, within MMP_RS05450 at 1045.749 kb on + strand, within MMP_RS05450 at 1046.134 kb on - strand at 1046.135 kb on + strand at 1046.135 kb on + strand at 1046.137 kb on + strand at 1046.139 kb on + strand at 1046.139 kb on + strand at 1046.148 kb on + strand at 1046.186 kb on + strand at 1046.193 kb on - strand at 1046.217 kb on - strand at 1046.221 kb on - strand at 1046.232 kb on - strand at 1046.233 kb on + strand at 1046.293 kb on + strand, within MMP_RS05455 at 1046.295 kb on - strand, within MMP_RS05455 at 1046.348 kb on - strand, within MMP_RS05455 at 1046.354 kb on - strand, within MMP_RS05455 at 1046.402 kb on - strand, within MMP_RS05455 at 1046.436 kb on + strand, within MMP_RS05455 at 1046.474 kb on - strand, within MMP_RS05455 at 1046.475 kb on + strand, within MMP_RS05455 at 1046.478 kb on - strand, within MMP_RS05455 at 1046.479 kb on + strand, within MMP_RS05455 at 1046.540 kb on + strand at 1046.540 kb on + strand at 1046.540 kb on + strand at 1046.552 kb on - strand at 1046.553 kb on + strand at 1046.579 kb on + strand at 1046.582 kb on - strand at 1046.582 kb on - strand at 1046.597 kb on - strand at 1046.598 kb on + strand at 1046.599 kb on - strand at 1046.823 kb on + strand, within MMP_RS05460 at 1046.904 kb on - strand, within MMP_RS05460
Per-strain Table
Position Strand Gene LocusTag Fraction Formate deepwell acetate and vitamin FREE remove 1,044,552 + -0.5 1,044,552 + -1.1 1,044,552 + -0.8 1,044,588 + +0.1 1,044,634 - +0.2 1,044,654 - +0.1 1,044,655 + +0.4 1,044,671 - -0.3 1,044,678 - +0.0 1,044,742 + MMP_RS05445 0.12 -1.6 1,044,758 + MMP_RS05445 0.14 -0.8 1,044,768 - MMP_RS05445 0.15 -1.2 1,044,825 - MMP_RS05445 0.22 -0.7 1,044,825 - MMP_RS05445 0.22 -0.9 1,044,825 - MMP_RS05445 0.22 -0.9 1,044,826 + MMP_RS05445 0.22 -0.9 1,044,826 + MMP_RS05445 0.22 -1.3 1,044,888 - MMP_RS05445 0.29 -0.7 1,044,948 + MMP_RS05445 0.36 +0.2 1,044,955 - MMP_RS05445 0.37 -0.2 1,044,955 - MMP_RS05445 0.37 -0.7 1,045,136 + MMP_RS05445 0.57 -0.4 1,045,178 + MMP_RS05445 0.62 -0.8 1,045,321 + MMP_RS05445 0.78 -0.5 1,045,508 + -0.4 1,045,538 + -0.4 1,045,706 + MMP_RS05450 0.28 -0.4 1,045,746 - MMP_RS05450 0.35 -0.4 1,045,747 + MMP_RS05450 0.35 -0.6 1,045,749 + MMP_RS05450 0.36 -1.0 1,046,134 - -0.6 1,046,135 + -0.2 1,046,135 + -0.4 1,046,137 + -0.7 1,046,139 + -0.3 1,046,139 + -0.5 1,046,148 + +0.7 1,046,186 + +0.5 1,046,193 - +0.2 1,046,217 - +0.3 1,046,221 - +0.4 1,046,232 - -0.1 1,046,233 + +0.4 1,046,293 + MMP_RS05455 0.19 -0.3 1,046,295 - MMP_RS05455 0.19 +0.0 1,046,348 - MMP_RS05455 0.37 +0.5 1,046,354 - MMP_RS05455 0.39 -0.1 1,046,402 - MMP_RS05455 0.54 +0.5 1,046,436 + MMP_RS05455 0.65 +0.7 1,046,474 - MMP_RS05455 0.78 +0.0 1,046,475 + MMP_RS05455 0.78 +0.7 1,046,478 - MMP_RS05455 0.79 +0.4 1,046,479 + MMP_RS05455 0.79 +0.1 1,046,540 + +0.6 1,046,540 + +0.1 1,046,540 + +0.5 1,046,552 - +0.7 1,046,553 + +0.1 1,046,579 + +0.5 1,046,582 - +0.4 1,046,582 - -0.7 1,046,597 - -0.3 1,046,598 + +0.1 1,046,599 - +0.9 1,046,823 + MMP_RS05460 0.22 +0.9 1,046,904 - MMP_RS05460 0.28 -0.1
Or see this region's nucleotide sequence