Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05450

Experiment: Formate deepwell acetate and vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05440 and MMP_RS05445 are separated by 47 nucleotidesMMP_RS05445 and MMP_RS05450 are separated by 35 nucleotidesMMP_RS05450 and MMP_RS05455 are separated by 131 nucleotidesMMP_RS05455 and MMP_RS05460 are separated by 22 nucleotides MMP_RS05440: MMP_RS05440 - winged helix-turn-helix transcriptional regulator, at 1,043,791 to 1,044,585 _RS05440 MMP_RS05445: MMP_RS05445 - CoB--CoM heterodisulfide reductase subunit B, at 1,044,633 to 1,045,514 _RS05445 MMP_RS05450: MMP_RS05450 - CoB--CoM heterodisulfide reductase subunit C, at 1,045,550 to 1,046,104 _RS05450 MMP_RS05455: MMP_RS05455 - DUF167 domain-containing protein, at 1,046,236 to 1,046,541 _RS05455 MMP_RS05460: MMP_RS05460 - YcaO-related McrA-glycine thioamidation protein, at 1,046,564 to 1,047,766 _RS05460 Position (kb) 1045 1046 1047Strain fitness (log2 ratio) -1 0 1at 1044.552 kb on + strandat 1044.552 kb on + strandat 1044.552 kb on + strandat 1044.588 kb on + strandat 1044.634 kb on - strandat 1044.654 kb on - strandat 1044.655 kb on + strandat 1044.671 kb on - strandat 1044.678 kb on - strandat 1044.742 kb on + strand, within MMP_RS05445at 1044.758 kb on + strand, within MMP_RS05445at 1044.768 kb on - strand, within MMP_RS05445at 1044.825 kb on - strand, within MMP_RS05445at 1044.825 kb on - strand, within MMP_RS05445at 1044.825 kb on - strand, within MMP_RS05445at 1044.826 kb on + strand, within MMP_RS05445at 1044.826 kb on + strand, within MMP_RS05445at 1044.888 kb on - strand, within MMP_RS05445at 1044.948 kb on + strand, within MMP_RS05445at 1044.955 kb on - strand, within MMP_RS05445at 1044.955 kb on - strand, within MMP_RS05445at 1045.136 kb on + strand, within MMP_RS05445at 1045.178 kb on + strand, within MMP_RS05445at 1045.321 kb on + strand, within MMP_RS05445at 1045.508 kb on + strandat 1045.538 kb on + strandat 1045.706 kb on + strand, within MMP_RS05450at 1045.746 kb on - strand, within MMP_RS05450at 1045.747 kb on + strand, within MMP_RS05450at 1045.749 kb on + strand, within MMP_RS05450at 1046.134 kb on - strandat 1046.135 kb on + strandat 1046.135 kb on + strandat 1046.137 kb on + strandat 1046.139 kb on + strandat 1046.139 kb on + strandat 1046.148 kb on + strandat 1046.186 kb on + strandat 1046.193 kb on - strandat 1046.217 kb on - strandat 1046.221 kb on - strandat 1046.232 kb on - strandat 1046.233 kb on + strandat 1046.293 kb on + strand, within MMP_RS05455at 1046.295 kb on - strand, within MMP_RS05455at 1046.348 kb on - strand, within MMP_RS05455at 1046.354 kb on - strand, within MMP_RS05455at 1046.402 kb on - strand, within MMP_RS05455at 1046.436 kb on + strand, within MMP_RS05455at 1046.474 kb on - strand, within MMP_RS05455at 1046.475 kb on + strand, within MMP_RS05455at 1046.478 kb on - strand, within MMP_RS05455at 1046.479 kb on + strand, within MMP_RS05455at 1046.540 kb on + strandat 1046.540 kb on + strandat 1046.540 kb on + strandat 1046.552 kb on - strandat 1046.553 kb on + strandat 1046.579 kb on + strandat 1046.582 kb on - strandat 1046.582 kb on - strandat 1046.597 kb on - strandat 1046.598 kb on + strandat 1046.599 kb on - strandat 1046.823 kb on + strand, within MMP_RS05460at 1046.904 kb on - strand, within MMP_RS05460

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate deepwell acetate and vitamin FREE
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1,044,552 + -0.5
1,044,552 + -1.1
1,044,552 + -0.8
1,044,588 + +0.1
1,044,634 - +0.2
1,044,654 - +0.1
1,044,655 + +0.4
1,044,671 - -0.3
1,044,678 - +0.0
1,044,742 + MMP_RS05445 0.12 -1.6
1,044,758 + MMP_RS05445 0.14 -0.8
1,044,768 - MMP_RS05445 0.15 -1.2
1,044,825 - MMP_RS05445 0.22 -0.7
1,044,825 - MMP_RS05445 0.22 -0.9
1,044,825 - MMP_RS05445 0.22 -0.9
1,044,826 + MMP_RS05445 0.22 -0.9
1,044,826 + MMP_RS05445 0.22 -1.3
1,044,888 - MMP_RS05445 0.29 -0.7
1,044,948 + MMP_RS05445 0.36 +0.2
1,044,955 - MMP_RS05445 0.37 -0.2
1,044,955 - MMP_RS05445 0.37 -0.7
1,045,136 + MMP_RS05445 0.57 -0.4
1,045,178 + MMP_RS05445 0.62 -0.8
1,045,321 + MMP_RS05445 0.78 -0.5
1,045,508 + -0.4
1,045,538 + -0.4
1,045,706 + MMP_RS05450 0.28 -0.4
1,045,746 - MMP_RS05450 0.35 -0.4
1,045,747 + MMP_RS05450 0.35 -0.6
1,045,749 + MMP_RS05450 0.36 -1.0
1,046,134 - -0.6
1,046,135 + -0.2
1,046,135 + -0.4
1,046,137 + -0.7
1,046,139 + -0.3
1,046,139 + -0.5
1,046,148 + +0.7
1,046,186 + +0.5
1,046,193 - +0.2
1,046,217 - +0.3
1,046,221 - +0.4
1,046,232 - -0.1
1,046,233 + +0.4
1,046,293 + MMP_RS05455 0.19 -0.3
1,046,295 - MMP_RS05455 0.19 +0.0
1,046,348 - MMP_RS05455 0.37 +0.5
1,046,354 - MMP_RS05455 0.39 -0.1
1,046,402 - MMP_RS05455 0.54 +0.5
1,046,436 + MMP_RS05455 0.65 +0.7
1,046,474 - MMP_RS05455 0.78 +0.0
1,046,475 + MMP_RS05455 0.78 +0.7
1,046,478 - MMP_RS05455 0.79 +0.4
1,046,479 + MMP_RS05455 0.79 +0.1
1,046,540 + +0.6
1,046,540 + +0.1
1,046,540 + +0.5
1,046,552 - +0.7
1,046,553 + +0.1
1,046,579 + +0.5
1,046,582 - +0.4
1,046,582 - -0.7
1,046,597 - -0.3
1,046,598 + +0.1
1,046,599 - +0.9
1,046,823 + MMP_RS05460 0.22 +0.9
1,046,904 - MMP_RS05460 0.28 -0.1

Or see this region's nucleotide sequence