Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00475

Experiment: Formate deepwell acetate and vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00465 and MMP_RS00470 are separated by 20 nucleotidesMMP_RS00470 and MMP_RS00475 are separated by 32 nucleotidesMMP_RS00475 and MMP_RS00480 are separated by 317 nucleotides MMP_RS00465: MMP_RS00465 - alpha-hydroxy-acid oxidizing protein, at 91,628 to 93,160 _RS00465 MMP_RS00470: MMP_RS00470 - hypothetical protein, at 93,181 to 93,951 _RS00470 MMP_RS00475: MMP_RS00475 - Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain, at 93,984 to 95,063 _RS00475 MMP_RS00480: MMP_RS00480 - hypothetical protein, at 95,381 to 96,079 _RS00480 Position (kb) 93 94 95 96Strain fitness (log2 ratio) -1 0 1at 93.954 kb on + strandat 93.973 kb on + strandat 93.973 kb on + strandat 94.078 kb on - strandat 94.080 kb on - strandat 94.130 kb on - strand, within MMP_RS00475at 94.131 kb on + strand, within MMP_RS00475at 94.134 kb on + strand, within MMP_RS00475at 94.218 kb on - strand, within MMP_RS00475at 94.219 kb on + strand, within MMP_RS00475at 94.413 kb on + strand, within MMP_RS00475at 94.485 kb on - strand, within MMP_RS00475at 94.720 kb on - strand, within MMP_RS00475at 94.824 kb on - strand, within MMP_RS00475at 94.824 kb on - strand, within MMP_RS00475at 94.824 kb on - strand, within MMP_RS00475at 94.825 kb on + strand, within MMP_RS00475at 94.877 kb on - strand, within MMP_RS00475at 94.877 kb on - strand, within MMP_RS00475at 94.928 kb on + strand, within MMP_RS00475at 95.071 kb on - strandat 95.071 kb on - strandat 95.101 kb on - strandat 95.179 kb on - strandat 95.227 kb on + strandat 95.272 kb on + strandat 95.281 kb on + strandat 95.315 kb on - strandat 95.315 kb on - strandat 95.315 kb on - strandat 95.348 kb on - strandat 95.373 kb on - strandat 95.445 kb on - strandat 95.452 kb on + strand, within MMP_RS00480at 95.466 kb on - strand, within MMP_RS00480at 95.475 kb on - strand, within MMP_RS00480at 95.475 kb on - strand, within MMP_RS00480at 95.513 kb on - strand, within MMP_RS00480at 95.513 kb on - strand, within MMP_RS00480at 95.514 kb on + strand, within MMP_RS00480at 95.563 kb on - strand, within MMP_RS00480at 95.804 kb on - strand, within MMP_RS00480at 95.856 kb on + strand, within MMP_RS00480at 95.970 kb on + strand, within MMP_RS00480at 96.002 kb on - strand, within MMP_RS00480at 96.009 kb on - strand, within MMP_RS00480at 96.009 kb on - strand, within MMP_RS00480at 96.055 kb on - strandat 96.055 kb on - strandat 96.055 kb on - strandat 96.056 kb on + strandat 96.058 kb on - strandat 96.058 kb on - strandat 96.058 kb on - strandat 96.058 kb on - strandat 96.060 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate deepwell acetate and vitamin FREE
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93,954 + -0.6
93,973 + -0.7
93,973 + -1.2
94,078 - -0.5
94,080 - -1.6
94,130 - MMP_RS00475 0.14 -0.8
94,131 + MMP_RS00475 0.14 -1.0
94,134 + MMP_RS00475 0.14 -0.9
94,218 - MMP_RS00475 0.22 -1.3
94,219 + MMP_RS00475 0.22 +0.1
94,413 + MMP_RS00475 0.40 -0.8
94,485 - MMP_RS00475 0.46 -1.0
94,720 - MMP_RS00475 0.68 -0.7
94,824 - MMP_RS00475 0.78 -1.0
94,824 - MMP_RS00475 0.78 -0.9
94,824 - MMP_RS00475 0.78 -1.4
94,825 + MMP_RS00475 0.78 -0.8
94,877 - MMP_RS00475 0.83 -0.7
94,877 - MMP_RS00475 0.83 -1.3
94,928 + MMP_RS00475 0.87 -1.2
95,071 - -0.5
95,071 - -0.0
95,101 - -0.0
95,179 - -0.0
95,227 + +0.1
95,272 + -0.1
95,281 + +0.2
95,315 - -0.4
95,315 - -0.2
95,315 - +0.3
95,348 - +0.0
95,373 - +0.8
95,445 - -0.1
95,452 + MMP_RS00480 0.10 -0.2
95,466 - MMP_RS00480 0.12 -0.2
95,475 - MMP_RS00480 0.13 +0.2
95,475 - MMP_RS00480 0.13 +0.2
95,513 - MMP_RS00480 0.19 -0.4
95,513 - MMP_RS00480 0.19 -0.4
95,514 + MMP_RS00480 0.19 +0.6
95,563 - MMP_RS00480 0.26 +0.5
95,804 - MMP_RS00480 0.61 -0.3
95,856 + MMP_RS00480 0.68 -0.2
95,970 + MMP_RS00480 0.84 -0.0
96,002 - MMP_RS00480 0.89 -0.1
96,009 - MMP_RS00480 0.90 +0.1
96,009 - MMP_RS00480 0.90 -0.3
96,055 - -0.1
96,055 - +0.0
96,055 - +0.1
96,056 + +0.1
96,058 - +0.2
96,058 - +1.1
96,058 - +0.2
96,058 - +0.0
96,060 - +0.3

Or see this region's nucleotide sequence