Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06568

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06566 and H281DRAFT_06567 are separated by 515 nucleotidesH281DRAFT_06567 and H281DRAFT_06568 are separated by 177 nucleotidesH281DRAFT_06568 and H281DRAFT_06569 are separated by 961 nucleotides H281DRAFT_06566: H281DRAFT_06566 - hypothetical protein, at 7,320 to 7,823 _06566 H281DRAFT_06567: H281DRAFT_06567 - hypothetical protein, at 8,339 to 8,518 _06567 H281DRAFT_06568: H281DRAFT_06568 - DNA-binding protein H-NS, at 8,696 to 8,980 _06568 H281DRAFT_06569: H281DRAFT_06569 - hypothetical protein, at 9,942 to 10,133 _06569 Position (kb) 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 7.706 kb on + strand, within H281DRAFT_06566at 7.706 kb on + strand, within H281DRAFT_06566at 7.706 kb on + strand, within H281DRAFT_06566at 7.706 kb on + strand, within H281DRAFT_06566at 7.706 kb on + strand, within H281DRAFT_06566at 7.707 kb on - strand, within H281DRAFT_06566at 7.710 kb on + strand, within H281DRAFT_06566at 7.710 kb on + strand, within H281DRAFT_06566at 7.729 kb on + strand, within H281DRAFT_06566at 7.729 kb on + strand, within H281DRAFT_06566at 7.730 kb on - strand, within H281DRAFT_06566at 7.730 kb on - strand, within H281DRAFT_06566at 7.767 kb on - strand, within H281DRAFT_06566at 7.864 kb on + strandat 7.865 kb on - strandat 7.873 kb on - strandat 8.031 kb on + strandat 8.031 kb on + strandat 8.032 kb on - strandat 8.032 kb on - strandat 8.032 kb on - strandat 8.045 kb on + strandat 8.073 kb on + strandat 8.135 kb on - strandat 8.135 kb on - strandat 8.136 kb on + strandat 8.170 kb on + strandat 8.240 kb on + strandat 8.240 kb on + strandat 8.241 kb on - strandat 8.363 kb on + strand, within H281DRAFT_06567at 8.363 kb on + strand, within H281DRAFT_06567at 8.511 kb on + strandat 8.511 kb on + strandat 8.531 kb on + strandat 8.531 kb on + strandat 8.535 kb on + strandat 8.535 kb on + strandat 8.535 kb on + strandat 8.535 kb on + strandat 8.536 kb on - strandat 8.536 kb on - strandat 8.536 kb on - strandat 8.536 kb on - strandat 8.536 kb on - strandat 8.536 kb on - strandat 8.544 kb on - strandat 8.562 kb on + strandat 8.562 kb on + strandat 8.563 kb on - strandat 8.563 kb on - strandat 8.617 kb on + strandat 8.617 kb on + strandat 8.617 kb on + strandat 8.618 kb on - strandat 8.618 kb on - strandat 8.689 kb on - strandat 8.788 kb on + strand, within H281DRAFT_06568at 8.788 kb on + strand, within H281DRAFT_06568at 8.793 kb on + strand, within H281DRAFT_06568at 8.960 kb on + strandat 8.960 kb on + strandat 8.961 kb on - strandat 8.961 kb on - strandat 8.971 kb on - strandat 9.016 kb on + strandat 9.016 kb on + strandat 9.016 kb on + strandat 9.017 kb on - strandat 9.095 kb on + strandat 9.095 kb on + strandat 9.195 kb on - strandat 9.220 kb on + strandat 9.288 kb on + strandat 9.288 kb on + strandat 9.288 kb on + strandat 9.288 kb on + strandat 9.288 kb on + strandat 9.289 kb on - strandat 9.412 kb on + strandat 9.413 kb on - strandat 9.426 kb on - strandat 9.511 kb on + strandat 9.512 kb on - strandat 9.565 kb on + strandat 9.680 kb on + strandat 9.680 kb on + strandat 9.680 kb on + strandat 9.681 kb on - strandat 9.681 kb on - strandat 9.681 kb on - strandat 9.685 kb on + strandat 9.713 kb on + strandat 9.714 kb on - strandat 9.714 kb on - strandat 9.714 kb on - strandat 9.834 kb on + strandat 9.857 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
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7,706 + H281DRAFT_06566 0.77 -0.2
7,706 + H281DRAFT_06566 0.77 -0.7
7,706 + H281DRAFT_06566 0.77 +0.2
7,706 + H281DRAFT_06566 0.77 +0.9
7,706 + H281DRAFT_06566 0.77 +1.0
7,707 - H281DRAFT_06566 0.77 +0.6
7,710 + H281DRAFT_06566 0.77 -0.2
7,710 + H281DRAFT_06566 0.77 -0.4
7,729 + H281DRAFT_06566 0.81 -1.3
7,729 + H281DRAFT_06566 0.81 +0.2
7,730 - H281DRAFT_06566 0.81 -0.7
7,730 - H281DRAFT_06566 0.81 +0.3
7,767 - H281DRAFT_06566 0.89 +0.9
7,864 + +0.7
7,865 - +0.6
7,873 - +0.5
8,031 + -1.0
8,031 + -0.9
8,032 - +0.3
8,032 - -0.5
8,032 - -1.0
8,045 + -0.2
8,073 + -0.9
8,135 - -0.9
8,135 - +0.5
8,136 + +1.0
8,170 + +0.0
8,240 + -0.7
8,240 + -0.4
8,241 - +1.3
8,363 + H281DRAFT_06567 0.13 +1.2
8,363 + H281DRAFT_06567 0.13 -0.9
8,511 + +1.3
8,511 + -0.4
8,531 + -0.4
8,531 + +0.0
8,535 + +1.0
8,535 + +1.3
8,535 + -0.7
8,535 + -0.3
8,536 - -0.9
8,536 - -0.4
8,536 - -0.5
8,536 - -0.5
8,536 - -0.1
8,536 - -0.5
8,544 - -0.0
8,562 + -0.2
8,562 + -0.4
8,563 - +0.6
8,563 - +0.0
8,617 + -0.3
8,617 + +0.0
8,617 + -0.1
8,618 - +0.7
8,618 - -0.3
8,689 - +0.2
8,788 + H281DRAFT_06568 0.32 -1.1
8,788 + H281DRAFT_06568 0.32 -0.6
8,793 + H281DRAFT_06568 0.34 -0.4
8,960 + +0.4
8,960 + +0.5
8,961 - +1.4
8,961 - -0.0
8,971 - +1.2
9,016 + +0.2
9,016 + +0.4
9,016 + +0.3
9,017 - +0.2
9,095 + +0.6
9,095 + +1.3
9,195 - +0.0
9,220 + +0.0
9,288 + +0.3
9,288 + +0.1
9,288 + -1.8
9,288 + +0.4
9,288 + -0.8
9,289 - +0.2
9,412 + -0.9
9,413 - +1.0
9,426 - -0.6
9,511 + -0.2
9,512 - -0.5
9,565 + -0.0
9,680 + -0.3
9,680 + +1.2
9,680 + +0.0
9,681 - +0.5
9,681 - +0.1
9,681 - -1.7
9,685 + -0.1
9,713 + -0.3
9,714 - -0.3
9,714 - +0.5
9,714 - +1.7
9,834 + +1.8
9,857 + +0.4

Or see this region's nucleotide sequence