Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06224

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06222 and H281DRAFT_06223 are separated by 139 nucleotidesH281DRAFT_06223 and H281DRAFT_06224 are separated by 7 nucleotidesH281DRAFT_06224 and H281DRAFT_06225 are separated by 614 nucleotides H281DRAFT_06222: H281DRAFT_06222 - 5S rRNA. Bacterial TSU, at 1 to 100 _06222 H281DRAFT_06223: H281DRAFT_06223 - Hydroxyneurosporene synthase (CrtC), at 240 to 425 _06223 H281DRAFT_06224: H281DRAFT_06224 - hippurate hydrolase, at 433 to 1,413 _06224 H281DRAFT_06225: H281DRAFT_06225 - Anaerobic selenocysteine-containing dehydrogenase, at 2,028 to 3,905 _06225 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.356 kb on + strand, within H281DRAFT_06223at 0.356 kb on + strand, within H281DRAFT_06223at 0.357 kb on - strandat 0.399 kb on + strand, within H281DRAFT_06223at 0.400 kb on - strand, within H281DRAFT_06223at 0.400 kb on - strand, within H281DRAFT_06223at 0.400 kb on - strand, within H281DRAFT_06223at 0.447 kb on + strandat 0.492 kb on + strandat 0.492 kb on + strandat 0.492 kb on + strandat 0.493 kb on - strandat 0.493 kb on - strandat 0.527 kb on + strandat 0.528 kb on - strandat 0.608 kb on + strand, within H281DRAFT_06224at 0.758 kb on + strand, within H281DRAFT_06224at 0.759 kb on - strand, within H281DRAFT_06224at 0.759 kb on - strand, within H281DRAFT_06224at 0.795 kb on - strand, within H281DRAFT_06224at 1.104 kb on + strand, within H281DRAFT_06224at 1.195 kb on + strand, within H281DRAFT_06224at 1.196 kb on - strand, within H281DRAFT_06224at 1.258 kb on + strand, within H281DRAFT_06224at 1.258 kb on + strand, within H281DRAFT_06224at 1.259 kb on - strandat 1.440 kb on + strandat 1.468 kb on + strandat 1.468 kb on + strandat 1.468 kb on + strandat 1.641 kb on + strandat 1.641 kb on + strandat 1.641 kb on + strandat 1.644 kb on + strandat 1.645 kb on - strandat 1.645 kb on - strandat 1.645 kb on - strandat 1.645 kb on - strandat 1.645 kb on - strandat 1.647 kb on + strandat 1.647 kb on + strandat 1.648 kb on - strandat 1.666 kb on - strandat 1.727 kb on + strandat 1.728 kb on - strandat 1.776 kb on + strandat 1.776 kb on + strandat 1.898 kb on - strandat 1.971 kb on - strandat 2.119 kb on + strandat 2.151 kb on + strandat 2.152 kb on - strandat 2.152 kb on - strandat 2.152 kb on - strandat 2.157 kb on + strandat 2.157 kb on + strandat 2.213 kb on + strandat 2.214 kb on - strandat 2.277 kb on + strand, within H281DRAFT_06225at 2.278 kb on - strand, within H281DRAFT_06225at 2.278 kb on - strand, within H281DRAFT_06225at 2.278 kb on - strand, within H281DRAFT_06225at 2.279 kb on + strand, within H281DRAFT_06225at 2.279 kb on + strand, within H281DRAFT_06225at 2.279 kb on + strand, within H281DRAFT_06225at 2.279 kb on + strand, within H281DRAFT_06225at 2.280 kb on - strand, within H281DRAFT_06225at 2.280 kb on - strand, within H281DRAFT_06225at 2.283 kb on + strand, within H281DRAFT_06225at 2.283 kb on + strand, within H281DRAFT_06225at 2.284 kb on - strand, within H281DRAFT_06225at 2.334 kb on - strand, within H281DRAFT_06225at 2.334 kb on - strand, within H281DRAFT_06225

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
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356 + H281DRAFT_06223 0.62 +0.9
356 + H281DRAFT_06223 0.62 +0.3
357 - +2.1
399 + H281DRAFT_06223 0.85 +0.5
400 - H281DRAFT_06223 0.86 -0.4
400 - H281DRAFT_06223 0.86 -0.5
400 - H281DRAFT_06223 0.86 +0.1
447 + +0.7
492 + +0.6
492 + -0.6
492 + -0.2
493 - +0.1
493 - -0.0
527 + +0.5
528 - +1.2
608 + H281DRAFT_06224 0.18 +0.9
758 + H281DRAFT_06224 0.33 +1.1
759 - H281DRAFT_06224 0.33 +1.4
759 - H281DRAFT_06224 0.33 +0.3
795 - H281DRAFT_06224 0.37 -0.8
1,104 + H281DRAFT_06224 0.68 -1.3
1,195 + H281DRAFT_06224 0.78 -0.0
1,196 - H281DRAFT_06224 0.78 +0.4
1,258 + H281DRAFT_06224 0.84 +0.7
1,258 + H281DRAFT_06224 0.84 +0.1
1,259 - +0.7
1,440 + +2.1
1,468 + -1.7
1,468 + +0.8
1,468 + +0.2
1,641 + +0.5
1,641 + -0.0
1,641 + -0.3
1,644 + +1.1
1,645 - +0.3
1,645 - +0.7
1,645 - +0.1
1,645 - -0.5
1,645 - +0.8
1,647 + +1.5
1,647 + +0.4
1,648 - -1.1
1,666 - +0.2
1,727 + +0.2
1,728 - +0.7
1,776 + +0.1
1,776 + -1.4
1,898 - -1.1
1,971 - +0.1
2,119 + +1.1
2,151 + +0.0
2,152 - -1.1
2,152 - -0.4
2,152 - +0.1
2,157 + -0.7
2,157 + +0.5
2,213 + -0.2
2,214 - -0.2
2,277 + H281DRAFT_06225 0.13 +0.2
2,278 - H281DRAFT_06225 0.13 +1.0
2,278 - H281DRAFT_06225 0.13 +0.5
2,278 - H281DRAFT_06225 0.13 -0.3
2,279 + H281DRAFT_06225 0.13 -0.1
2,279 + H281DRAFT_06225 0.13 -0.3
2,279 + H281DRAFT_06225 0.13 +0.5
2,279 + H281DRAFT_06225 0.13 -0.8
2,280 - H281DRAFT_06225 0.13 +0.3
2,280 - H281DRAFT_06225 0.13 +1.0
2,283 + H281DRAFT_06225 0.14 -0.7
2,283 + H281DRAFT_06225 0.14 +0.1
2,284 - H281DRAFT_06225 0.14 +0.7
2,334 - H281DRAFT_06225 0.16 -2.5
2,334 - H281DRAFT_06225 0.16 -0.3

Or see this region's nucleotide sequence