Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06210

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06208 and H281DRAFT_06209 are separated by 40 nucleotidesH281DRAFT_06209 and H281DRAFT_06210 overlap by 4 nucleotidesH281DRAFT_06210 and H281DRAFT_06211 are separated by 146 nucleotides H281DRAFT_06208: H281DRAFT_06208 - Sugar phosphate permease, at 100,578 to 101,780 _06208 H281DRAFT_06209: H281DRAFT_06209 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 101,821 to 102,693 _06209 H281DRAFT_06210: H281DRAFT_06210 - aconitate hydratase, at 102,690 to 105,386 _06210 H281DRAFT_06211: H281DRAFT_06211 - transcriptional regulator, propionate catabolism operon regulatory protein, at 105,533 to 107,440 _06211 Position (kb) 102 103 104 105 106Strain fitness (log2 ratio) -3 -2 -1 0 1at 101.713 kb on - strandat 101.775 kb on - strandat 101.855 kb on + strandat 101.856 kb on - strandat 101.920 kb on + strand, within H281DRAFT_06209at 101.920 kb on + strand, within H281DRAFT_06209at 101.921 kb on - strand, within H281DRAFT_06209at 101.970 kb on + strand, within H281DRAFT_06209at 101.970 kb on + strand, within H281DRAFT_06209at 101.971 kb on - strand, within H281DRAFT_06209at 101.971 kb on - strand, within H281DRAFT_06209at 102.041 kb on - strand, within H281DRAFT_06209at 102.298 kb on + strand, within H281DRAFT_06209at 102.453 kb on + strand, within H281DRAFT_06209at 102.454 kb on - strand, within H281DRAFT_06209at 102.454 kb on - strand, within H281DRAFT_06209at 102.484 kb on - strand, within H281DRAFT_06209at 102.540 kb on - strand, within H281DRAFT_06209at 102.540 kb on - strand, within H281DRAFT_06209at 102.543 kb on + strand, within H281DRAFT_06209at 102.750 kb on + strandat 103.397 kb on + strand, within H281DRAFT_06210at 103.397 kb on + strand, within H281DRAFT_06210at 103.397 kb on + strandat 103.398 kb on - strand, within H281DRAFT_06210at 103.398 kb on - strand, within H281DRAFT_06210at 103.398 kb on - strand, within H281DRAFT_06210at 103.398 kb on - strand, within H281DRAFT_06210at 103.427 kb on + strand, within H281DRAFT_06210at 103.428 kb on - strand, within H281DRAFT_06210at 103.451 kb on + strand, within H281DRAFT_06210at 103.452 kb on - strand, within H281DRAFT_06210at 103.455 kb on - strand, within H281DRAFT_06210at 103.513 kb on + strand, within H281DRAFT_06210at 103.600 kb on + strand, within H281DRAFT_06210at 103.601 kb on - strand, within H281DRAFT_06210at 103.601 kb on - strand, within H281DRAFT_06210at 103.601 kb on - strand, within H281DRAFT_06210at 104.308 kb on + strand, within H281DRAFT_06210at 104.309 kb on - strand, within H281DRAFT_06210at 104.313 kb on + strand, within H281DRAFT_06210at 104.314 kb on - strand, within H281DRAFT_06210at 104.314 kb on - strand, within H281DRAFT_06210at 104.316 kb on - strand, within H281DRAFT_06210at 104.316 kb on - strand, within H281DRAFT_06210at 104.603 kb on + strand, within H281DRAFT_06210at 104.604 kb on - strand, within H281DRAFT_06210at 104.610 kb on - strand, within H281DRAFT_06210at 104.610 kb on - strand, within H281DRAFT_06210at 104.658 kb on + strand, within H281DRAFT_06210at 104.661 kb on + strand, within H281DRAFT_06210at 105.398 kb on + strandat 105.417 kb on + strandat 105.418 kb on - strandat 105.453 kb on + strandat 105.454 kb on - strandat 105.471 kb on - strandat 105.493 kb on + strandat 105.493 kb on + strandat 105.547 kb on + strandat 105.547 kb on + strandat 105.574 kb on + strandat 105.620 kb on + strandat 105.641 kb on + strandat 105.642 kb on - strandat 105.642 kb on - strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.661 kb on - strandat 105.661 kb on - strandat 105.661 kb on - strandat 105.761 kb on + strand, within H281DRAFT_06211at 105.761 kb on + strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.795 kb on + strand, within H281DRAFT_06211at 106.363 kb on + strand, within H281DRAFT_06211at 106.363 kb on + strand, within H281DRAFT_06211at 106.364 kb on - strand, within H281DRAFT_06211at 106.364 kb on - strand, within H281DRAFT_06211at 106.364 kb on - strand, within H281DRAFT_06211at 106.364 kb on - strand, within H281DRAFT_06211at 106.367 kb on + strand, within H281DRAFT_06211at 106.367 kb on + strand, within H281DRAFT_06211at 106.367 kb on + strand, within H281DRAFT_06211at 106.368 kb on - strand, within H281DRAFT_06211at 106.368 kb on - strand, within H281DRAFT_06211

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
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101,713 - -0.8
101,775 - +1.0
101,855 + +0.1
101,856 - +0.5
101,920 + H281DRAFT_06209 0.11 -2.2
101,920 + H281DRAFT_06209 0.11 +1.2
101,921 - H281DRAFT_06209 0.11 -1.6
101,970 + H281DRAFT_06209 0.17 -0.4
101,970 + H281DRAFT_06209 0.17 +0.7
101,971 - H281DRAFT_06209 0.17 +0.3
101,971 - H281DRAFT_06209 0.17 +0.5
102,041 - H281DRAFT_06209 0.25 +0.0
102,298 + H281DRAFT_06209 0.55 -0.1
102,453 + H281DRAFT_06209 0.72 +1.4
102,454 - H281DRAFT_06209 0.73 +0.3
102,454 - H281DRAFT_06209 0.73 -1.1
102,484 - H281DRAFT_06209 0.76 -0.3
102,540 - H281DRAFT_06209 0.82 +0.5
102,540 - H281DRAFT_06209 0.82 +0.5
102,543 + H281DRAFT_06209 0.83 -0.3
102,750 + +1.3
103,397 + H281DRAFT_06210 0.26 +0.2
103,397 + H281DRAFT_06210 0.26 +0.4
103,397 + +0.7
103,398 - H281DRAFT_06210 0.26 -1.6
103,398 - H281DRAFT_06210 0.26 +0.6
103,398 - H281DRAFT_06210 0.26 +1.0
103,398 - H281DRAFT_06210 0.26 +1.4
103,427 + H281DRAFT_06210 0.27 -0.8
103,428 - H281DRAFT_06210 0.27 +0.1
103,451 + H281DRAFT_06210 0.28 -0.3
103,452 - H281DRAFT_06210 0.28 +0.0
103,455 - H281DRAFT_06210 0.28 -0.2
103,513 + H281DRAFT_06210 0.31 -0.8
103,600 + H281DRAFT_06210 0.34 -0.5
103,601 - H281DRAFT_06210 0.34 +0.9
103,601 - H281DRAFT_06210 0.34 +0.4
103,601 - H281DRAFT_06210 0.34 +0.5
104,308 + H281DRAFT_06210 0.60 +0.5
104,309 - H281DRAFT_06210 0.60 +0.6
104,313 + H281DRAFT_06210 0.60 +1.2
104,314 - H281DRAFT_06210 0.60 +1.0
104,314 - H281DRAFT_06210 0.60 +0.2
104,316 - H281DRAFT_06210 0.60 -0.0
104,316 - H281DRAFT_06210 0.60 -0.1
104,603 + H281DRAFT_06210 0.71 -1.3
104,604 - H281DRAFT_06210 0.71 -0.4
104,610 - H281DRAFT_06210 0.71 -0.6
104,610 - H281DRAFT_06210 0.71 +1.3
104,658 + H281DRAFT_06210 0.73 +0.6
104,661 + H281DRAFT_06210 0.73 +0.4
105,398 + -0.6
105,417 + +0.5
105,418 - +0.2
105,453 + -1.3
105,454 - +0.7
105,471 - +0.2
105,493 + -0.3
105,493 + -0.8
105,547 + -0.2
105,547 + +0.1
105,574 + -0.7
105,620 + -0.8
105,641 + +0.2
105,642 - +0.1
105,642 - +0.5
105,660 + +0.9
105,660 + -2.8
105,660 + +0.5
105,660 + -0.7
105,660 + +0.8
105,660 + +0.9
105,660 + -0.3
105,660 + -0.1
105,661 - +0.1
105,661 - -0.2
105,661 - +0.5
105,761 + H281DRAFT_06211 0.12 +0.2
105,761 + H281DRAFT_06211 0.12 -0.4
105,762 - H281DRAFT_06211 0.12 +0.5
105,762 - H281DRAFT_06211 0.12 -0.6
105,762 - H281DRAFT_06211 0.12 +0.5
105,762 - H281DRAFT_06211 0.12 +0.0
105,762 - H281DRAFT_06211 0.12 +0.1
105,762 - H281DRAFT_06211 0.12 -0.7
105,762 - H281DRAFT_06211 0.12 -0.5
105,795 + H281DRAFT_06211 0.14 -0.1
106,363 + H281DRAFT_06211 0.44 +0.3
106,363 + H281DRAFT_06211 0.44 +0.3
106,364 - H281DRAFT_06211 0.44 +0.2
106,364 - H281DRAFT_06211 0.44 +0.2
106,364 - H281DRAFT_06211 0.44 -0.8
106,364 - H281DRAFT_06211 0.44 +0.3
106,367 + H281DRAFT_06211 0.44 -1.2
106,367 + H281DRAFT_06211 0.44 +0.7
106,367 + H281DRAFT_06211 0.44 +0.6
106,368 - H281DRAFT_06211 0.44 +0.2
106,368 - H281DRAFT_06211 0.44 -1.0

Or see this region's nucleotide sequence