Experiment: 2-Deoxy-D-Ribose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05814 and H281DRAFT_05815 are separated by 97 nucleotides H281DRAFT_05815 and H281DRAFT_05816 are separated by 116 nucleotides H281DRAFT_05816 and H281DRAFT_05817 are separated by 81 nucleotides
H281DRAFT_05814: H281DRAFT_05814 - Predicted transcription regulator, contains HTH domain, MarR family, at 91,006 to 91,518
_05814
H281DRAFT_05815: H281DRAFT_05815 - 5,10-methenyltetrahydrofolate synthetase, at 91,616 to 92,158
_05815
H281DRAFT_05816: H281DRAFT_05816 - soluble lytic murein transglycosylase, at 92,275 to 94,203
_05816
H281DRAFT_05817: H281DRAFT_05817 - NADH dehydrogenase, at 94,285 to 95,238
_05817
Position (kb)
92
93
94
95 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 91.290 kb on - strand, within H281DRAFT_05814 at 91.290 kb on - strand, within H281DRAFT_05814 at 91.294 kb on - strand, within H281DRAFT_05814 at 91.301 kb on - strand, within H281DRAFT_05814 at 91.305 kb on - strand, within H281DRAFT_05814 at 91.305 kb on - strand, within H281DRAFT_05814 at 91.305 kb on - strand, within H281DRAFT_05814 at 91.483 kb on + strand at 91.483 kb on + strand at 91.483 kb on + strand at 91.483 kb on + strand at 91.483 kb on + strand at 91.483 kb on + strand at 91.484 kb on - strand at 91.484 kb on - strand at 91.484 kb on - strand at 91.484 kb on - strand at 91.515 kb on - strand at 91.517 kb on - strand at 91.517 kb on - strand at 91.569 kb on + strand at 91.570 kb on - strand at 91.570 kb on - strand at 91.618 kb on - strand at 91.679 kb on + strand, within H281DRAFT_05815 at 91.679 kb on + strand, within H281DRAFT_05815 at 91.680 kb on - strand, within H281DRAFT_05815 at 91.680 kb on - strand, within H281DRAFT_05815 at 91.717 kb on - strand, within H281DRAFT_05815 at 91.842 kb on - strand, within H281DRAFT_05815 at 91.842 kb on - strand at 92.046 kb on + strand, within H281DRAFT_05815 at 92.047 kb on - strand, within H281DRAFT_05815 at 92.116 kb on + strand at 92.116 kb on + strand at 92.138 kb on + strand at 92.153 kb on + strand at 92.201 kb on + strand at 92.201 kb on + strand at 92.201 kb on + strand at 92.201 kb on + strand at 92.201 kb on + strand at 92.202 kb on - strand at 92.260 kb on + strand at 92.260 kb on + strand at 92.307 kb on + strand at 92.307 kb on + strand at 92.307 kb on + strand at 92.307 kb on + strand at 92.443 kb on + strand at 92.444 kb on - strand at 92.458 kb on + strand at 92.467 kb on + strand at 92.467 kb on + strand at 92.468 kb on - strand, within H281DRAFT_05816 at 92.647 kb on + strand, within H281DRAFT_05816 at 92.647 kb on + strand, within H281DRAFT_05816 at 92.647 kb on + strand, within H281DRAFT_05816 at 92.647 kb on + strand, within H281DRAFT_05816 at 92.648 kb on - strand, within H281DRAFT_05816 at 92.767 kb on + strand, within H281DRAFT_05816 at 92.768 kb on - strand, within H281DRAFT_05816 at 92.857 kb on + strand, within H281DRAFT_05816 at 92.870 kb on - strand, within H281DRAFT_05816 at 92.878 kb on - strand, within H281DRAFT_05816 at 92.878 kb on - strand, within H281DRAFT_05816 at 93.208 kb on + strand, within H281DRAFT_05816 at 93.313 kb on + strand, within H281DRAFT_05816 at 93.401 kb on - strand, within H281DRAFT_05816 at 93.450 kb on + strand, within H281DRAFT_05816 at 93.451 kb on - strand, within H281DRAFT_05816 at 93.523 kb on + strand, within H281DRAFT_05816 at 93.524 kb on - strand, within H281DRAFT_05816 at 93.524 kb on - strand, within H281DRAFT_05816 at 93.613 kb on + strand, within H281DRAFT_05816 at 93.634 kb on + strand, within H281DRAFT_05816 at 93.634 kb on + strand, within H281DRAFT_05816 at 93.634 kb on + strand, within H281DRAFT_05816 at 93.635 kb on - strand, within H281DRAFT_05816 at 93.635 kb on - strand, within H281DRAFT_05816 at 93.635 kb on - strand, within H281DRAFT_05816 at 93.695 kb on - strand, within H281DRAFT_05816 at 93.695 kb on - strand, within H281DRAFT_05816 at 93.764 kb on - strand, within H281DRAFT_05816 at 93.943 kb on + strand, within H281DRAFT_05816 at 93.943 kb on + strand, within H281DRAFT_05816 at 93.944 kb on - strand, within H281DRAFT_05816 at 93.958 kb on + strand, within H281DRAFT_05816 at 93.958 kb on + strand, within H281DRAFT_05816 at 93.958 kb on + strand, within H281DRAFT_05816 at 93.959 kb on - strand, within H281DRAFT_05816 at 94.000 kb on + strand, within H281DRAFT_05816 at 94.105 kb on + strand at 94.105 kb on + strand at 94.106 kb on - strand at 94.135 kb on + strand at 94.135 kb on + strand at 94.139 kb on - strand at 94.189 kb on + strand at 94.189 kb on + strand at 94.396 kb on + strand, within H281DRAFT_05817 at 94.396 kb on + strand, within H281DRAFT_05817 at 94.397 kb on - strand at 94.397 kb on - strand, within H281DRAFT_05817 at 94.398 kb on + strand, within H281DRAFT_05817 at 94.398 kb on + strand, within H281DRAFT_05817 at 94.425 kb on + strand, within H281DRAFT_05817 at 94.500 kb on + strand, within H281DRAFT_05817 at 94.849 kb on + strand, within H281DRAFT_05817 at 94.850 kb on - strand, within H281DRAFT_05817 at 94.940 kb on - strand, within H281DRAFT_05817 at 94.964 kb on - strand, within H281DRAFT_05817
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C) remove 91,290 - H281DRAFT_05814 0.55 -2.7 91,290 - H281DRAFT_05814 0.55 -0.7 91,294 - H281DRAFT_05814 0.56 -1.0 91,301 - H281DRAFT_05814 0.58 -0.4 91,305 - H281DRAFT_05814 0.58 -1.0 91,305 - H281DRAFT_05814 0.58 -2.8 91,305 - H281DRAFT_05814 0.58 -0.7 91,483 + -0.9 91,483 + -1.1 91,483 + -4.2 91,483 + -0.6 91,483 + -1.3 91,483 + +0.7 91,484 - +0.1 91,484 - -0.9 91,484 - -1.6 91,484 - -1.5 91,515 - +0.3 91,517 - -0.4 91,517 - +3.6 91,569 + +0.5 91,570 - -0.0 91,570 - +0.8 91,618 - -0.0 91,679 + H281DRAFT_05815 0.12 -2.1 91,679 + H281DRAFT_05815 0.12 -1.0 91,680 - H281DRAFT_05815 0.12 -2.6 91,680 - H281DRAFT_05815 0.12 -4.4 91,717 - H281DRAFT_05815 0.19 -3.6 91,842 - H281DRAFT_05815 0.42 -4.6 91,842 - -1.7 92,046 + H281DRAFT_05815 0.79 -3.7 92,047 - H281DRAFT_05815 0.79 -3.3 92,116 + -0.1 92,116 + -3.3 92,138 + -4.7 92,153 + -3.1 92,201 + -1.2 92,201 + -2.2 92,201 + -1.4 92,201 + -0.1 92,201 + +2.5 92,202 - +0.3 92,260 + -0.8 92,260 + -0.2 92,307 + +0.5 92,307 + +0.3 92,307 + -0.6 92,307 + +0.0 92,443 + -0.9 92,444 - +0.1 92,458 + +0.2 92,467 + +0.4 92,467 + +0.6 92,468 - H281DRAFT_05816 0.10 +0.1 92,647 + H281DRAFT_05816 0.19 +0.5 92,647 + H281DRAFT_05816 0.19 -1.2 92,647 + H281DRAFT_05816 0.19 +0.3 92,647 + H281DRAFT_05816 0.19 -1.0 92,648 - H281DRAFT_05816 0.19 +0.9 92,767 + H281DRAFT_05816 0.26 +0.3 92,768 - H281DRAFT_05816 0.26 -0.6 92,857 + H281DRAFT_05816 0.30 -0.9 92,870 - H281DRAFT_05816 0.31 -0.5 92,878 - H281DRAFT_05816 0.31 -2.5 92,878 - H281DRAFT_05816 0.31 +0.6 93,208 + H281DRAFT_05816 0.48 -0.2 93,313 + H281DRAFT_05816 0.54 +0.1 93,401 - H281DRAFT_05816 0.58 +0.2 93,450 + H281DRAFT_05816 0.61 +0.4 93,451 - H281DRAFT_05816 0.61 -0.6 93,523 + H281DRAFT_05816 0.65 +3.5 93,524 - H281DRAFT_05816 0.65 +0.6 93,524 - H281DRAFT_05816 0.65 +1.4 93,613 + H281DRAFT_05816 0.69 +1.0 93,634 + H281DRAFT_05816 0.70 +0.1 93,634 + H281DRAFT_05816 0.70 +2.3 93,634 + H281DRAFT_05816 0.70 -0.4 93,635 - H281DRAFT_05816 0.71 +0.1 93,635 - H281DRAFT_05816 0.71 -0.6 93,635 - H281DRAFT_05816 0.71 +0.6 93,695 - H281DRAFT_05816 0.74 -0.3 93,695 - H281DRAFT_05816 0.74 +0.1 93,764 - H281DRAFT_05816 0.77 +0.7 93,943 + H281DRAFT_05816 0.86 +0.2 93,943 + H281DRAFT_05816 0.86 -0.9 93,944 - H281DRAFT_05816 0.87 -0.1 93,958 + H281DRAFT_05816 0.87 +0.7 93,958 + H281DRAFT_05816 0.87 +0.0 93,958 + H281DRAFT_05816 0.87 -0.3 93,959 - H281DRAFT_05816 0.87 +0.6 94,000 + H281DRAFT_05816 0.89 +0.1 94,105 + +0.8 94,105 + +0.1 94,106 - -3.4 94,135 + -0.2 94,135 + -0.6 94,139 - +0.6 94,189 + +1.1 94,189 + -1.7 94,396 + H281DRAFT_05817 0.12 +0.5 94,396 + H281DRAFT_05817 0.12 +2.8 94,397 - -1.1 94,397 - H281DRAFT_05817 0.12 -1.4 94,398 + H281DRAFT_05817 0.12 -0.1 94,398 + H281DRAFT_05817 0.12 -0.1 94,425 + H281DRAFT_05817 0.15 -0.2 94,500 + H281DRAFT_05817 0.23 -1.3 94,849 + H281DRAFT_05817 0.59 +0.4 94,850 - H281DRAFT_05817 0.59 -1.4 94,940 - H281DRAFT_05817 0.69 -0.9 94,964 - H281DRAFT_05817 0.71 -0.5
Or see this region's nucleotide sequence