Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04658

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04656 and H281DRAFT_04657 are separated by 71 nucleotidesH281DRAFT_04657 and H281DRAFT_04658 are separated by 334 nucleotidesH281DRAFT_04658 and H281DRAFT_04659 are separated by 382 nucleotides H281DRAFT_04656: H281DRAFT_04656 - Predicted transcriptional regulator, at 57,902 to 58,642 _04656 H281DRAFT_04657: H281DRAFT_04657 - hypothetical protein, at 58,714 to 59,097 _04657 H281DRAFT_04658: H281DRAFT_04658 - putative N6-adenine-specific DNA methylase, at 59,432 to 60,721 _04658 H281DRAFT_04659: H281DRAFT_04659 - hypothetical protein, at 61,104 to 61,886 _04659 Position (kb) 59 60 61Strain fitness (log2 ratio) -1 0 1 2 3 4at 58.476 kb on + strand, within H281DRAFT_04656at 58.477 kb on - strand, within H281DRAFT_04656at 58.603 kb on - strandat 58.632 kb on + strandat 58.687 kb on - strandat 58.715 kb on + strandat 58.779 kb on - strand, within H281DRAFT_04657at 58.779 kb on - strand, within H281DRAFT_04657at 58.920 kb on + strand, within H281DRAFT_04657at 59.024 kb on + strand, within H281DRAFT_04657at 59.024 kb on + strand, within H281DRAFT_04657at 59.185 kb on + strandat 59.186 kb on - strandat 59.187 kb on + strandat 59.188 kb on - strandat 59.188 kb on - strandat 59.247 kb on + strandat 59.345 kb on - strandat 59.373 kb on - strandat 59.396 kb on + strandat 59.428 kb on - strandat 59.922 kb on - strand, within H281DRAFT_04658at 60.006 kb on + strand, within H281DRAFT_04658at 60.007 kb on - strand, within H281DRAFT_04658at 60.478 kb on - strand, within H281DRAFT_04658at 60.478 kb on - strand, within H281DRAFT_04658at 60.478 kb on - strand, within H281DRAFT_04658at 60.758 kb on + strandat 60.759 kb on - strandat 60.763 kb on + strandat 60.858 kb on + strandat 60.858 kb on + strandat 60.916 kb on + strandat 60.917 kb on - strandat 60.944 kb on - strandat 60.951 kb on - strandat 60.951 kb on - strandat 61.035 kb on + strandat 61.035 kb on + strandat 61.106 kb on - strandat 61.358 kb on + strand, within H281DRAFT_04659at 61.358 kb on + strand, within H281DRAFT_04659at 61.359 kb on - strand, within H281DRAFT_04659at 61.483 kb on + strand, within H281DRAFT_04659at 61.483 kb on + strand, within H281DRAFT_04659at 61.483 kb on + strand, within H281DRAFT_04659at 61.496 kb on + strand, within H281DRAFT_04659

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
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58,476 + H281DRAFT_04656 0.77 -0.4
58,477 - H281DRAFT_04656 0.78 +0.3
58,603 - -0.2
58,632 + -1.5
58,687 - -0.2
58,715 + +1.6
58,779 - H281DRAFT_04657 0.17 +0.1
58,779 - H281DRAFT_04657 0.17 +0.9
58,920 + H281DRAFT_04657 0.54 -0.1
59,024 + H281DRAFT_04657 0.81 +0.7
59,024 + H281DRAFT_04657 0.81 +0.5
59,185 + +1.6
59,186 - -1.4
59,187 + +0.2
59,188 - +1.8
59,188 - +0.4
59,247 + -0.8
59,345 - +1.0
59,373 - -0.3
59,396 + +0.4
59,428 - -0.8
59,922 - H281DRAFT_04658 0.38 +0.0
60,006 + H281DRAFT_04658 0.44 -0.1
60,007 - H281DRAFT_04658 0.45 -0.0
60,478 - H281DRAFT_04658 0.81 -1.3
60,478 - H281DRAFT_04658 0.81 +0.1
60,478 - H281DRAFT_04658 0.81 +0.2
60,758 + +0.2
60,759 - +0.4
60,763 + -0.6
60,858 + -0.3
60,858 + +0.6
60,916 + +0.2
60,917 - +4.4
60,944 - -0.7
60,951 - +0.0
60,951 - -0.0
61,035 + -0.5
61,035 + -1.1
61,106 - -0.0
61,358 + H281DRAFT_04659 0.32 -0.2
61,358 + H281DRAFT_04659 0.32 +0.5
61,359 - H281DRAFT_04659 0.33 -0.5
61,483 + H281DRAFT_04659 0.48 -0.4
61,483 + H281DRAFT_04659 0.48 +0.5
61,483 + H281DRAFT_04659 0.48 -0.8
61,496 + H281DRAFT_04659 0.50 -0.6

Or see this region's nucleotide sequence