Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03368

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03367 and H281DRAFT_03368 are separated by 852 nucleotidesH281DRAFT_03368 and H281DRAFT_03369 are separated by 20 nucleotides H281DRAFT_03367: H281DRAFT_03367 - electron transfer flavoprotein alpha subunit apoprotein, at 428,226 to 429,170 _03367 H281DRAFT_03368: H281DRAFT_03368 - Uncharacterised protein family protein, at 430,023 to 430,307 _03368 H281DRAFT_03369: H281DRAFT_03369 - membrane fusion protein, multidrug efflux system, at 430,328 to 431,386 _03369 Position (kb) 430 431Strain fitness (log2 ratio) -1 0 1at 429.168 kb on + strandat 429.169 kb on - strandat 429.173 kb on - strandat 429.242 kb on + strandat 429.269 kb on + strandat 429.526 kb on + strandat 429.703 kb on - strandat 429.761 kb on + strandat 429.762 kb on - strandat 429.762 kb on - strandat 429.959 kb on + strandat 430.135 kb on - strand, within H281DRAFT_03368at 430.157 kb on + strand, within H281DRAFT_03368at 430.248 kb on + strand, within H281DRAFT_03368at 430.377 kb on + strandat 430.398 kb on + strandat 430.416 kb on + strandat 430.416 kb on + strandat 430.454 kb on + strand, within H281DRAFT_03369at 430.668 kb on - strand, within H281DRAFT_03369at 430.745 kb on - strand, within H281DRAFT_03369at 430.769 kb on + strand, within H281DRAFT_03369at 430.770 kb on - strand, within H281DRAFT_03369at 430.770 kb on - strand, within H281DRAFT_03369at 430.872 kb on + strand, within H281DRAFT_03369at 431.063 kb on + strand, within H281DRAFT_03369

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
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429,168 + +0.6
429,169 - -0.1
429,173 - +0.9
429,242 + -0.3
429,269 + -0.8
429,526 + +0.9
429,703 - +0.1
429,761 + -0.9
429,762 - +1.2
429,762 - +0.4
429,959 + -1.1
430,135 - H281DRAFT_03368 0.39 -0.3
430,157 + H281DRAFT_03368 0.47 +0.1
430,248 + H281DRAFT_03368 0.79 -0.8
430,377 + +0.2
430,398 + -0.1
430,416 + +0.6
430,416 + +0.0
430,454 + H281DRAFT_03369 0.12 -0.5
430,668 - H281DRAFT_03369 0.32 +0.0
430,745 - H281DRAFT_03369 0.39 -0.5
430,769 + H281DRAFT_03369 0.42 +0.4
430,770 - H281DRAFT_03369 0.42 -0.7
430,770 - H281DRAFT_03369 0.42 -0.2
430,872 + H281DRAFT_03369 0.51 -1.0
431,063 + H281DRAFT_03369 0.69 +0.3

Or see this region's nucleotide sequence