Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02484

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02483 and H281DRAFT_02484 are separated by 209 nucleotidesH281DRAFT_02484 and H281DRAFT_02485 are separated by 74 nucleotides H281DRAFT_02483: H281DRAFT_02483 - transcriptional regulator, LysR family, at 56,262 to 57,179 _02483 H281DRAFT_02484: H281DRAFT_02484 - transcriptional regulator, GntR family, at 57,389 to 58,036 _02484 H281DRAFT_02485: H281DRAFT_02485 - gamma-glutamyltranspeptidase / glutathione hydrolase, at 58,111 to 59,775 _02485 Position (kb) 57 58 59Strain fitness (log2 ratio) -2 -1 0 1at 56.907 kb on + strand, within H281DRAFT_02483at 56.907 kb on + strand, within H281DRAFT_02483at 56.908 kb on - strand, within H281DRAFT_02483at 56.929 kb on + strand, within H281DRAFT_02483at 57.096 kb on - strandat 57.096 kb on - strandat 57.176 kb on - strandat 57.176 kb on - strandat 57.252 kb on - strandat 57.490 kb on - strand, within H281DRAFT_02484at 57.813 kb on + strand, within H281DRAFT_02484at 57.840 kb on - strand, within H281DRAFT_02484at 57.918 kb on + strand, within H281DRAFT_02484at 57.918 kb on + strand, within H281DRAFT_02484at 57.919 kb on - strand, within H281DRAFT_02484at 58.005 kb on - strandat 58.326 kb on + strand, within H281DRAFT_02485at 58.595 kb on - strand, within H281DRAFT_02485at 58.927 kb on + strand, within H281DRAFT_02485at 58.927 kb on + strand, within H281DRAFT_02485

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
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56,907 + H281DRAFT_02483 0.70 -0.1
56,907 + H281DRAFT_02483 0.70 +0.4
56,908 - H281DRAFT_02483 0.70 -0.9
56,929 + H281DRAFT_02483 0.73 +0.4
57,096 - -0.5
57,096 - -0.4
57,176 - +0.3
57,176 - -0.1
57,252 - +0.3
57,490 - H281DRAFT_02484 0.16 -0.1
57,813 + H281DRAFT_02484 0.65 +0.1
57,840 - H281DRAFT_02484 0.70 -0.2
57,918 + H281DRAFT_02484 0.82 -1.7
57,918 + H281DRAFT_02484 0.82 -1.9
57,919 - H281DRAFT_02484 0.82 +0.3
58,005 - -0.1
58,326 + H281DRAFT_02485 0.13 +0.4
58,595 - H281DRAFT_02485 0.29 -0.2
58,927 + H281DRAFT_02485 0.49 +0.2
58,927 + H281DRAFT_02485 0.49 -0.1

Or see this region's nucleotide sequence