Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01312

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01311 and H281DRAFT_01312 are separated by 32 nucleotidesH281DRAFT_01312 and H281DRAFT_01313 are separated by 90 nucleotides H281DRAFT_01311: H281DRAFT_01311 - fructose-bisphosphate aldolase, at 149,952 to 150,989 _01311 H281DRAFT_01312: H281DRAFT_01312 - transketolase, at 151,022 to 153,082 _01312 H281DRAFT_01313: H281DRAFT_01313 - phosphoribulokinase, at 153,173 to 154,045 _01313 Position (kb) 151 152 153 154Strain fitness (log2 ratio) -1 0 1at 150.360 kb on - strand, within H281DRAFT_01311at 150.808 kb on + strand, within H281DRAFT_01311at 150.964 kb on - strandat 151.161 kb on + strandat 151.162 kb on - strandat 151.162 kb on - strandat 151.836 kb on + strand, within H281DRAFT_01312at 151.837 kb on - strand, within H281DRAFT_01312at 152.118 kb on + strand, within H281DRAFT_01312at 152.320 kb on + strand, within H281DRAFT_01312at 152.433 kb on + strand, within H281DRAFT_01312at 152.608 kb on - strand, within H281DRAFT_01312at 152.807 kb on - strand, within H281DRAFT_01312at 152.817 kb on + strand, within H281DRAFT_01312at 152.842 kb on - strand, within H281DRAFT_01312at 152.936 kb on + strandat 153.407 kb on - strand, within H281DRAFT_01313at 153.461 kb on + strand, within H281DRAFT_01313at 153.462 kb on - strand, within H281DRAFT_01313at 153.462 kb on - strand, within H281DRAFT_01313at 153.462 kb on - strand, within H281DRAFT_01313at 153.657 kb on + strand, within H281DRAFT_01313at 153.754 kb on - strand, within H281DRAFT_01313

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
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150,360 - H281DRAFT_01311 0.39 +0.7
150,808 + H281DRAFT_01311 0.82 -0.9
150,964 - -0.6
151,161 + -0.1
151,162 - +0.1
151,162 - +1.2
151,836 + H281DRAFT_01312 0.39 -0.5
151,837 - H281DRAFT_01312 0.40 +0.1
152,118 + H281DRAFT_01312 0.53 -0.2
152,320 + H281DRAFT_01312 0.63 +0.2
152,433 + H281DRAFT_01312 0.68 +0.4
152,608 - H281DRAFT_01312 0.77 +0.3
152,807 - H281DRAFT_01312 0.87 -1.6
152,817 + H281DRAFT_01312 0.87 +1.6
152,842 - H281DRAFT_01312 0.88 +0.7
152,936 + +0.7
153,407 - H281DRAFT_01313 0.27 -0.5
153,461 + H281DRAFT_01313 0.33 -0.5
153,462 - H281DRAFT_01313 0.33 +0.2
153,462 - H281DRAFT_01313 0.33 -0.4
153,462 - H281DRAFT_01313 0.33 -0.5
153,657 + H281DRAFT_01313 0.55 -0.4
153,754 - H281DRAFT_01313 0.67 -0.3

Or see this region's nucleotide sequence