Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00360

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00359 and H281DRAFT_00360 are separated by 12 nucleotidesH281DRAFT_00360 and H281DRAFT_00361 are separated by 46 nucleotides H281DRAFT_00359: H281DRAFT_00359 - Acyl-CoA dehydrogenase, at 392,405 to 393,535 _00359 H281DRAFT_00360: H281DRAFT_00360 - hypothetical protein, at 393,548 to 394,756 _00360 H281DRAFT_00361: H281DRAFT_00361 - (3S)-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) / enoyl-CoA hydratase domain (from data), at 394,803 to 396,923 _00361 Position (kb) 393 394 395Strain fitness (log2 ratio) -1 0 1at 393.262 kb on + strand, within H281DRAFT_00359at 393.466 kb on - strandat 394.009 kb on + strand, within H281DRAFT_00360at 394.038 kb on + strand, within H281DRAFT_00360at 394.104 kb on - strand, within H281DRAFT_00360at 394.149 kb on - strand, within H281DRAFT_00360at 394.294 kb on - strand, within H281DRAFT_00360at 395.574 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
remove
393,262 + H281DRAFT_00359 0.76 +1.2
393,466 - -0.7
394,009 + H281DRAFT_00360 0.38 -1.4
394,038 + H281DRAFT_00360 0.41 +0.2
394,104 - H281DRAFT_00360 0.46 -0.2
394,149 - H281DRAFT_00360 0.50 -0.3
394,294 - H281DRAFT_00360 0.62 -0.6
395,574 + -0.3

Or see this region's nucleotide sequence