Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00113

Experiment: 2-Deoxy-D-Ribose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00112 and H281DRAFT_00113 are separated by 42 nucleotidesH281DRAFT_00113 and H281DRAFT_00114 are separated by 228 nucleotides H281DRAFT_00112: H281DRAFT_00112 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 119,186 to 120,346 _00112 H281DRAFT_00113: H281DRAFT_00113 - transcriptional regulator, LysR family, at 120,389 to 121,330 _00113 H281DRAFT_00114: H281DRAFT_00114 - sulfite reductase (NADPH) beta subunit, at 121,559 to 123,238 _00114 Position (kb) 120 121 122Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 119.406 kb on + strand, within H281DRAFT_00112at 119.455 kb on - strand, within H281DRAFT_00112at 119.761 kb on + strand, within H281DRAFT_00112at 119.762 kb on - strand, within H281DRAFT_00112at 119.838 kb on + strand, within H281DRAFT_00112at 119.892 kb on + strand, within H281DRAFT_00112at 119.892 kb on + strand, within H281DRAFT_00112at 120.156 kb on + strand, within H281DRAFT_00112at 120.214 kb on + strand, within H281DRAFT_00112at 120.221 kb on + strand, within H281DRAFT_00112at 120.483 kb on + strandat 120.483 kb on + strandat 120.484 kb on - strand, within H281DRAFT_00113at 120.484 kb on - strand, within H281DRAFT_00113at 120.865 kb on + strand, within H281DRAFT_00113at 120.867 kb on + strand, within H281DRAFT_00113at 120.867 kb on + strand, within H281DRAFT_00113at 120.867 kb on + strand, within H281DRAFT_00113at 121.078 kb on + strand, within H281DRAFT_00113at 121.249 kb on + strandat 121.249 kb on + strandat 121.251 kb on + strandat 121.252 kb on - strandat 121.332 kb on + strandat 121.333 kb on - strandat 121.334 kb on + strandat 121.428 kb on - strandat 121.435 kb on - strandat 121.451 kb on + strandat 121.451 kb on + strandat 121.452 kb on - strandat 121.457 kb on + strandat 121.457 kb on + strandat 121.563 kb on - strandat 121.563 kb on - strandat 121.563 kb on - strandat 121.568 kb on + strandat 121.569 kb on - strandat 121.694 kb on + strandat 121.698 kb on - strandat 121.712 kb on + strandat 121.713 kb on - strandat 122.120 kb on + strand, within H281DRAFT_00114at 122.120 kb on + strand, within H281DRAFT_00114at 122.268 kb on - strand, within H281DRAFT_00114at 122.297 kb on + strand, within H281DRAFT_00114at 122.298 kb on - strand, within H281DRAFT_00114

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 20 mM (C)
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119,406 + H281DRAFT_00112 0.19 +0.5
119,455 - H281DRAFT_00112 0.23 -0.9
119,761 + H281DRAFT_00112 0.50 -0.2
119,762 - H281DRAFT_00112 0.50 +1.1
119,838 + H281DRAFT_00112 0.56 +0.1
119,892 + H281DRAFT_00112 0.61 -0.1
119,892 + H281DRAFT_00112 0.61 +0.8
120,156 + H281DRAFT_00112 0.84 -0.3
120,214 + H281DRAFT_00112 0.89 +0.6
120,221 + H281DRAFT_00112 0.89 +0.2
120,483 + -3.3
120,483 + -2.8
120,484 - H281DRAFT_00113 0.10 -3.2
120,484 - H281DRAFT_00113 0.10 -2.1
120,865 + H281DRAFT_00113 0.51 -4.3
120,867 + H281DRAFT_00113 0.51 -3.3
120,867 + H281DRAFT_00113 0.51 -3.4
120,867 + H281DRAFT_00113 0.51 -1.3
121,078 + H281DRAFT_00113 0.73 -2.4
121,249 + +0.1
121,249 + -1.4
121,251 + +0.4
121,252 - -2.8
121,332 + +0.3
121,333 - +0.5
121,334 + -0.1
121,428 - +0.1
121,435 - -3.7
121,451 + -0.1
121,451 + +0.1
121,452 - -1.7
121,457 + +0.2
121,457 + -0.6
121,563 - -3.9
121,563 - -3.6
121,563 - -3.8
121,568 + -2.5
121,569 - -2.7
121,694 + -0.7
121,698 - -3.3
121,712 + -1.2
121,713 - -2.2
122,120 + H281DRAFT_00114 0.33 -4.4
122,120 + H281DRAFT_00114 0.33 -5.0
122,268 - H281DRAFT_00114 0.42 -3.5
122,297 + H281DRAFT_00114 0.44 -1.2
122,298 - H281DRAFT_00114 0.44 -0.8

Or see this region's nucleotide sequence