Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3449 and Dsui_3450 are separated by 139 nucleotides Dsui_3450 and Dsui_3451 are separated by 73 nucleotides
Dsui_3449: Dsui_3449 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,708,323 to 3,710,467
_3449
Dsui_3450: Dsui_3450 - acetyl-CoA hydrolase, at 3,710,607 to 3,711,902
_3450
Dsui_3451: Dsui_3451 - sugar phosphate permease, at 3,711,976 to 3,713,259
_3451
Position (kb)
3710
3711
3712 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3709.857 kb on + strand, within Dsui_3449 at 3709.862 kb on + strand, within Dsui_3449 at 3709.875 kb on - strand, within Dsui_3449 at 3709.937 kb on - strand, within Dsui_3449 at 3709.950 kb on + strand, within Dsui_3449 at 3709.950 kb on + strand, within Dsui_3449 at 3710.126 kb on - strand, within Dsui_3449 at 3710.168 kb on - strand, within Dsui_3449 at 3710.359 kb on - strand at 3710.543 kb on + strand at 3710.605 kb on + strand at 3710.613 kb on - strand at 3710.627 kb on - strand at 3710.875 kb on - strand, within Dsui_3450 at 3710.916 kb on + strand, within Dsui_3450 at 3710.921 kb on + strand, within Dsui_3450 at 3710.960 kb on + strand, within Dsui_3450 at 3711.028 kb on + strand, within Dsui_3450 at 3711.056 kb on - strand, within Dsui_3450 at 3711.111 kb on - strand, within Dsui_3450 at 3711.115 kb on + strand, within Dsui_3450 at 3711.163 kb on - strand, within Dsui_3450 at 3711.232 kb on + strand, within Dsui_3450 at 3711.345 kb on - strand, within Dsui_3450 at 3711.347 kb on + strand, within Dsui_3450 at 3711.353 kb on + strand, within Dsui_3450 at 3711.417 kb on - strand, within Dsui_3450 at 3711.434 kb on + strand, within Dsui_3450 at 3711.434 kb on + strand, within Dsui_3450 at 3711.442 kb on - strand, within Dsui_3450 at 3711.726 kb on - strand, within Dsui_3450 at 3711.726 kb on - strand, within Dsui_3450 at 3711.784 kb on + strand at 3711.789 kb on + strand at 3711.843 kb on + strand at 3711.904 kb on - strand at 3711.981 kb on + strand at 3712.319 kb on - strand, within Dsui_3451 at 3712.335 kb on + strand, within Dsui_3451 at 3712.395 kb on + strand, within Dsui_3451 at 3712.452 kb on + strand, within Dsui_3451 at 3712.487 kb on - strand, within Dsui_3451 at 3712.494 kb on + strand, within Dsui_3451 at 3712.519 kb on + strand, within Dsui_3451 at 3712.608 kb on - strand, within Dsui_3451 at 3712.655 kb on + strand, within Dsui_3451 at 3712.655 kb on + strand, within Dsui_3451 at 3712.716 kb on - strand, within Dsui_3451
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 3,709,857 + Dsui_3449 0.72 -0.3 3,709,862 + Dsui_3449 0.72 -0.0 3,709,875 - Dsui_3449 0.72 -3.3 3,709,937 - Dsui_3449 0.75 -1.4 3,709,950 + Dsui_3449 0.76 -1.3 3,709,950 + Dsui_3449 0.76 +0.2 3,710,126 - Dsui_3449 0.84 -3.4 3,710,168 - Dsui_3449 0.86 -0.5 3,710,359 - -1.5 3,710,543 + -0.1 3,710,605 + +0.0 3,710,613 - -0.6 3,710,627 - +0.7 3,710,875 - Dsui_3450 0.21 +0.3 3,710,916 + Dsui_3450 0.24 +1.1 3,710,921 + Dsui_3450 0.24 +1.1 3,710,960 + Dsui_3450 0.27 +1.4 3,711,028 + Dsui_3450 0.32 +1.5 3,711,056 - Dsui_3450 0.35 +0.2 3,711,111 - Dsui_3450 0.39 +0.7 3,711,115 + Dsui_3450 0.39 +0.9 3,711,163 - Dsui_3450 0.43 -3.1 3,711,232 + Dsui_3450 0.48 +0.3 3,711,345 - Dsui_3450 0.57 -0.4 3,711,347 + Dsui_3450 0.57 +0.3 3,711,353 + Dsui_3450 0.58 +0.5 3,711,417 - Dsui_3450 0.62 +0.6 3,711,434 + Dsui_3450 0.64 +0.8 3,711,434 + Dsui_3450 0.64 +0.8 3,711,442 - Dsui_3450 0.64 +0.7 3,711,726 - Dsui_3450 0.86 +1.8 3,711,726 - Dsui_3450 0.86 +0.4 3,711,784 + +0.7 3,711,789 + +0.5 3,711,843 + +1.2 3,711,904 - -1.2 3,711,981 + -0.1 3,712,319 - Dsui_3451 0.27 +0.5 3,712,335 + Dsui_3451 0.28 -0.4 3,712,395 + Dsui_3451 0.33 -1.3 3,712,452 + Dsui_3451 0.37 +1.1 3,712,487 - Dsui_3451 0.40 +0.4 3,712,494 + Dsui_3451 0.40 -1.0 3,712,519 + Dsui_3451 0.42 +0.3 3,712,608 - Dsui_3451 0.49 +0.5 3,712,655 + Dsui_3451 0.53 +0.8 3,712,655 + Dsui_3451 0.53 -2.0 3,712,716 - Dsui_3451 0.58 -0.0
Or see this region's nucleotide sequence