Strain Fitness in Dechlorosoma suillum PS around Dsui_3239

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3238 and Dsui_3239 are separated by 164 nucleotidesDsui_3239 and Dsui_3240 are separated by 27 nucleotides Dsui_3238: Dsui_3238 - PAS domain S-box, at 3,481,098 to 3,482,726 _3238 Dsui_3239: Dsui_3239 - acetyl-CoA acetyltransferase, at 3,482,891 to 3,484,069 _3239 Dsui_3240: Dsui_3240 - cobalamin biosynthesis protein cobD/CbiB, at 3,484,097 to 3,485,017 _3240 Position (kb) 3482 3483 3484 3485Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3481.894 kb on - strand, within Dsui_3238at 3481.964 kb on + strand, within Dsui_3238at 3482.020 kb on + strand, within Dsui_3238at 3482.052 kb on - strand, within Dsui_3238at 3482.056 kb on - strand, within Dsui_3238at 3482.139 kb on + strand, within Dsui_3238at 3482.249 kb on + strand, within Dsui_3238at 3482.257 kb on - strand, within Dsui_3238at 3482.257 kb on - strand, within Dsui_3238at 3482.257 kb on - strand, within Dsui_3238at 3482.284 kb on - strand, within Dsui_3238at 3482.320 kb on + strand, within Dsui_3238at 3482.328 kb on - strand, within Dsui_3238at 3482.333 kb on - strand, within Dsui_3238at 3482.403 kb on + strand, within Dsui_3238at 3482.403 kb on + strand, within Dsui_3238at 3482.411 kb on - strand, within Dsui_3238at 3482.433 kb on - strand, within Dsui_3238at 3482.454 kb on - strand, within Dsui_3238at 3482.523 kb on - strand, within Dsui_3238at 3482.602 kb on + strandat 3482.643 kb on - strandat 3482.691 kb on - strandat 3482.731 kb on + strandat 3482.741 kb on - strandat 3482.757 kb on + strandat 3482.926 kb on - strandat 3483.037 kb on - strand, within Dsui_3239at 3483.042 kb on - strand, within Dsui_3239at 3483.096 kb on + strand, within Dsui_3239at 3483.104 kb on - strand, within Dsui_3239at 3483.126 kb on + strand, within Dsui_3239at 3483.159 kb on - strand, within Dsui_3239at 3483.170 kb on - strand, within Dsui_3239at 3483.242 kb on - strand, within Dsui_3239at 3483.515 kb on + strand, within Dsui_3239at 3483.539 kb on + strand, within Dsui_3239at 3483.549 kb on + strand, within Dsui_3239at 3483.559 kb on + strand, within Dsui_3239at 3483.559 kb on + strand, within Dsui_3239at 3483.623 kb on - strand, within Dsui_3239at 3483.661 kb on - strand, within Dsui_3239at 3483.680 kb on - strand, within Dsui_3239at 3483.783 kb on - strand, within Dsui_3239at 3483.865 kb on - strand, within Dsui_3239at 3483.920 kb on + strand, within Dsui_3239at 3483.935 kb on - strand, within Dsui_3239at 3484.100 kb on + strandat 3484.245 kb on + strand, within Dsui_3240at 3484.298 kb on - strand, within Dsui_3240at 3484.389 kb on - strand, within Dsui_3240at 3484.460 kb on + strand, within Dsui_3240at 3484.520 kb on - strand, within Dsui_3240at 3484.525 kb on - strand, within Dsui_3240at 3484.525 kb on - strand, within Dsui_3240at 3484.760 kb on - strand, within Dsui_3240at 3484.809 kb on + strand, within Dsui_3240at 3484.942 kb on - strandat 3484.976 kb on - strandat 3484.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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3,481,894 - Dsui_3238 0.49 -0.3
3,481,964 + Dsui_3238 0.53 +0.4
3,482,020 + Dsui_3238 0.57 -0.0
3,482,052 - Dsui_3238 0.59 -0.4
3,482,056 - Dsui_3238 0.59 +1.1
3,482,139 + Dsui_3238 0.64 +0.1
3,482,249 + Dsui_3238 0.71 -0.2
3,482,257 - Dsui_3238 0.71 +0.5
3,482,257 - Dsui_3238 0.71 +0.7
3,482,257 - Dsui_3238 0.71 +0.8
3,482,284 - Dsui_3238 0.73 -1.0
3,482,320 + Dsui_3238 0.75 -1.4
3,482,328 - Dsui_3238 0.76 -0.1
3,482,333 - Dsui_3238 0.76 +0.2
3,482,403 + Dsui_3238 0.80 -0.6
3,482,403 + Dsui_3238 0.80 +0.2
3,482,411 - Dsui_3238 0.81 -0.7
3,482,433 - Dsui_3238 0.82 +2.4
3,482,454 - Dsui_3238 0.83 +0.7
3,482,523 - Dsui_3238 0.87 +0.8
3,482,602 + +0.2
3,482,643 - -0.8
3,482,691 - +0.1
3,482,731 + +0.3
3,482,741 - -0.3
3,482,757 + +0.9
3,482,926 - -1.0
3,483,037 - Dsui_3239 0.12 -2.4
3,483,042 - Dsui_3239 0.13 -4.4
3,483,096 + Dsui_3239 0.17 -3.5
3,483,104 - Dsui_3239 0.18 -1.7
3,483,126 + Dsui_3239 0.20 -4.1
3,483,159 - Dsui_3239 0.23 -3.5
3,483,170 - Dsui_3239 0.24 -0.2
3,483,242 - Dsui_3239 0.30 -0.7
3,483,515 + Dsui_3239 0.53 -2.7
3,483,539 + Dsui_3239 0.55 -0.2
3,483,549 + Dsui_3239 0.56 +0.3
3,483,559 + Dsui_3239 0.57 -1.7
3,483,559 + Dsui_3239 0.57 -1.7
3,483,623 - Dsui_3239 0.62 -2.1
3,483,661 - Dsui_3239 0.65 -0.6
3,483,680 - Dsui_3239 0.67 -3.5
3,483,783 - Dsui_3239 0.76 -0.7
3,483,865 - Dsui_3239 0.83 +1.8
3,483,920 + Dsui_3239 0.87 -3.9
3,483,935 - Dsui_3239 0.89 -1.7
3,484,100 + -0.9
3,484,245 + Dsui_3240 0.16 -1.6
3,484,298 - Dsui_3240 0.22 -1.4
3,484,389 - Dsui_3240 0.32 -0.4
3,484,460 + Dsui_3240 0.39 +0.9
3,484,520 - Dsui_3240 0.46 +0.2
3,484,525 - Dsui_3240 0.46 +0.7
3,484,525 - Dsui_3240 0.46 -1.8
3,484,760 - Dsui_3240 0.72 -0.8
3,484,809 + Dsui_3240 0.77 +0.4
3,484,942 - -1.0
3,484,976 - +0.6
3,484,976 - -0.4

Or see this region's nucleotide sequence