Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3238 and Dsui_3239 are separated by 164 nucleotides Dsui_3239 and Dsui_3240 are separated by 27 nucleotides
Dsui_3238: Dsui_3238 - PAS domain S-box, at 3,481,098 to 3,482,726
_3238
Dsui_3239: Dsui_3239 - acetyl-CoA acetyltransferase, at 3,482,891 to 3,484,069
_3239
Dsui_3240: Dsui_3240 - cobalamin biosynthesis protein cobD/CbiB, at 3,484,097 to 3,485,017
_3240
Position (kb)
3482
3483
3484
3485 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3481.894 kb on - strand, within Dsui_3238 at 3481.964 kb on + strand, within Dsui_3238 at 3482.020 kb on + strand, within Dsui_3238 at 3482.052 kb on - strand, within Dsui_3238 at 3482.056 kb on - strand, within Dsui_3238 at 3482.139 kb on + strand, within Dsui_3238 at 3482.249 kb on + strand, within Dsui_3238 at 3482.257 kb on - strand, within Dsui_3238 at 3482.257 kb on - strand, within Dsui_3238 at 3482.257 kb on - strand, within Dsui_3238 at 3482.284 kb on - strand, within Dsui_3238 at 3482.320 kb on + strand, within Dsui_3238 at 3482.328 kb on - strand, within Dsui_3238 at 3482.333 kb on - strand, within Dsui_3238 at 3482.403 kb on + strand, within Dsui_3238 at 3482.403 kb on + strand, within Dsui_3238 at 3482.411 kb on - strand, within Dsui_3238 at 3482.433 kb on - strand, within Dsui_3238 at 3482.454 kb on - strand, within Dsui_3238 at 3482.523 kb on - strand, within Dsui_3238 at 3482.602 kb on + strand at 3482.643 kb on - strand at 3482.691 kb on - strand at 3482.731 kb on + strand at 3482.741 kb on - strand at 3482.757 kb on + strand at 3482.926 kb on - strand at 3483.037 kb on - strand, within Dsui_3239 at 3483.042 kb on - strand, within Dsui_3239 at 3483.096 kb on + strand, within Dsui_3239 at 3483.104 kb on - strand, within Dsui_3239 at 3483.126 kb on + strand, within Dsui_3239 at 3483.159 kb on - strand, within Dsui_3239 at 3483.170 kb on - strand, within Dsui_3239 at 3483.242 kb on - strand, within Dsui_3239 at 3483.515 kb on + strand, within Dsui_3239 at 3483.539 kb on + strand, within Dsui_3239 at 3483.549 kb on + strand, within Dsui_3239 at 3483.559 kb on + strand, within Dsui_3239 at 3483.559 kb on + strand, within Dsui_3239 at 3483.623 kb on - strand, within Dsui_3239 at 3483.661 kb on - strand, within Dsui_3239 at 3483.680 kb on - strand, within Dsui_3239 at 3483.783 kb on - strand, within Dsui_3239 at 3483.865 kb on - strand, within Dsui_3239 at 3483.920 kb on + strand, within Dsui_3239 at 3483.935 kb on - strand, within Dsui_3239 at 3484.100 kb on + strand at 3484.245 kb on + strand, within Dsui_3240 at 3484.298 kb on - strand, within Dsui_3240 at 3484.389 kb on - strand, within Dsui_3240 at 3484.460 kb on + strand, within Dsui_3240 at 3484.520 kb on - strand, within Dsui_3240 at 3484.525 kb on - strand, within Dsui_3240 at 3484.525 kb on - strand, within Dsui_3240 at 3484.760 kb on - strand, within Dsui_3240 at 3484.809 kb on + strand, within Dsui_3240 at 3484.942 kb on - strand at 3484.976 kb on - strand at 3484.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 3,481,894 - Dsui_3238 0.49 -0.3 3,481,964 + Dsui_3238 0.53 +0.4 3,482,020 + Dsui_3238 0.57 -0.0 3,482,052 - Dsui_3238 0.59 -0.4 3,482,056 - Dsui_3238 0.59 +1.1 3,482,139 + Dsui_3238 0.64 +0.1 3,482,249 + Dsui_3238 0.71 -0.2 3,482,257 - Dsui_3238 0.71 +0.5 3,482,257 - Dsui_3238 0.71 +0.7 3,482,257 - Dsui_3238 0.71 +0.8 3,482,284 - Dsui_3238 0.73 -1.0 3,482,320 + Dsui_3238 0.75 -1.4 3,482,328 - Dsui_3238 0.76 -0.1 3,482,333 - Dsui_3238 0.76 +0.2 3,482,403 + Dsui_3238 0.80 -0.6 3,482,403 + Dsui_3238 0.80 +0.2 3,482,411 - Dsui_3238 0.81 -0.7 3,482,433 - Dsui_3238 0.82 +2.4 3,482,454 - Dsui_3238 0.83 +0.7 3,482,523 - Dsui_3238 0.87 +0.8 3,482,602 + +0.2 3,482,643 - -0.8 3,482,691 - +0.1 3,482,731 + +0.3 3,482,741 - -0.3 3,482,757 + +0.9 3,482,926 - -1.0 3,483,037 - Dsui_3239 0.12 -2.4 3,483,042 - Dsui_3239 0.13 -4.4 3,483,096 + Dsui_3239 0.17 -3.5 3,483,104 - Dsui_3239 0.18 -1.7 3,483,126 + Dsui_3239 0.20 -4.1 3,483,159 - Dsui_3239 0.23 -3.5 3,483,170 - Dsui_3239 0.24 -0.2 3,483,242 - Dsui_3239 0.30 -0.7 3,483,515 + Dsui_3239 0.53 -2.7 3,483,539 + Dsui_3239 0.55 -0.2 3,483,549 + Dsui_3239 0.56 +0.3 3,483,559 + Dsui_3239 0.57 -1.7 3,483,559 + Dsui_3239 0.57 -1.7 3,483,623 - Dsui_3239 0.62 -2.1 3,483,661 - Dsui_3239 0.65 -0.6 3,483,680 - Dsui_3239 0.67 -3.5 3,483,783 - Dsui_3239 0.76 -0.7 3,483,865 - Dsui_3239 0.83 +1.8 3,483,920 + Dsui_3239 0.87 -3.9 3,483,935 - Dsui_3239 0.89 -1.7 3,484,100 + -0.9 3,484,245 + Dsui_3240 0.16 -1.6 3,484,298 - Dsui_3240 0.22 -1.4 3,484,389 - Dsui_3240 0.32 -0.4 3,484,460 + Dsui_3240 0.39 +0.9 3,484,520 - Dsui_3240 0.46 +0.2 3,484,525 - Dsui_3240 0.46 +0.7 3,484,525 - Dsui_3240 0.46 -1.8 3,484,760 - Dsui_3240 0.72 -0.8 3,484,809 + Dsui_3240 0.77 +0.4 3,484,942 - -1.0 3,484,976 - +0.6 3,484,976 - -0.4
Or see this region's nucleotide sequence