Strain Fitness in Dechlorosoma suillum PS around Dsui_3195

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3193 and Dsui_3194 overlap by 4 nucleotidesDsui_3194 and Dsui_3195 overlap by 4 nucleotidesDsui_3195 and Dsui_3196 are separated by 130 nucleotides Dsui_3193: Dsui_3193 - phosphoribosylanthranilate isomerase, at 3,427,581 to 3,428,228 _3193 Dsui_3194: Dsui_3194 - pseudouridylate synthase I, at 3,428,225 to 3,429,052 _3194 Dsui_3195: Dsui_3195 - Cobalt transport protein, at 3,429,049 to 3,429,678 _3195 Dsui_3196: Dsui_3196 - FimV N-terminal domain protein, at 3,429,809 to 3,432,817 _3196 Position (kb) 3429 3430Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3428.262 kb on - strandat 3428.313 kb on - strand, within Dsui_3194at 3428.394 kb on + strand, within Dsui_3194at 3428.402 kb on - strand, within Dsui_3194at 3428.427 kb on - strand, within Dsui_3194at 3428.454 kb on - strand, within Dsui_3194at 3428.574 kb on + strandat 3428.582 kb on - strandat 3428.582 kb on - strand, within Dsui_3194at 3428.621 kb on - strand, within Dsui_3194at 3428.665 kb on - strand, within Dsui_3194at 3428.683 kb on - strand, within Dsui_3194at 3428.992 kb on + strandat 3428.993 kb on + strandat 3429.012 kb on - strandat 3429.027 kb on - strandat 3429.027 kb on - strandat 3429.066 kb on - strandat 3429.290 kb on - strand, within Dsui_3195at 3429.407 kb on - strandat 3429.431 kb on - strandat 3429.581 kb on + strandat 3429.826 kb on + strandat 3429.897 kb on - strandat 3430.022 kb on - strandat 3430.068 kb on + strandat 3430.377 kb on - strand, within Dsui_3196at 3430.416 kb on + strandat 3430.417 kb on + strand, within Dsui_3196at 3430.482 kb on + strand, within Dsui_3196at 3430.556 kb on - strand, within Dsui_3196at 3430.556 kb on - strand, within Dsui_3196at 3430.604 kb on + strand, within Dsui_3196at 3430.622 kb on + strand, within Dsui_3196at 3430.625 kb on - strand, within Dsui_3196at 3430.653 kb on + strand, within Dsui_3196at 3430.661 kb on + strand, within Dsui_3196at 3430.673 kb on - strand, within Dsui_3196

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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3,428,262 - +0.4
3,428,313 - Dsui_3194 0.11 -1.6
3,428,394 + Dsui_3194 0.20 -4.4
3,428,402 - Dsui_3194 0.21 -2.5
3,428,427 - Dsui_3194 0.24 -1.7
3,428,454 - Dsui_3194 0.28 -4.5
3,428,574 + -4.1
3,428,582 - +1.2
3,428,582 - Dsui_3194 0.43 -3.2
3,428,621 - Dsui_3194 0.48 -2.5
3,428,665 - Dsui_3194 0.53 -1.7
3,428,683 - Dsui_3194 0.55 -3.9
3,428,992 + -1.6
3,428,993 + -2.2
3,429,012 - -2.4
3,429,027 - -0.8
3,429,027 - -1.7
3,429,066 - -0.2
3,429,290 - Dsui_3195 0.38 -3.1
3,429,407 - -0.6
3,429,431 - -0.9
3,429,581 + -2.8
3,429,826 + +0.2
3,429,897 - -0.6
3,430,022 - +0.4
3,430,068 + -1.2
3,430,377 - Dsui_3196 0.19 +0.5
3,430,416 + +2.4
3,430,417 + Dsui_3196 0.20 -1.6
3,430,482 + Dsui_3196 0.22 -0.3
3,430,556 - Dsui_3196 0.25 +1.0
3,430,556 - Dsui_3196 0.25 +0.3
3,430,604 + Dsui_3196 0.26 +0.0
3,430,622 + Dsui_3196 0.27 -1.8
3,430,625 - Dsui_3196 0.27 +0.4
3,430,653 + Dsui_3196 0.28 -0.5
3,430,661 + Dsui_3196 0.28 -0.3
3,430,673 - Dsui_3196 0.29 +0.7

Or see this region's nucleotide sequence