Strain Fitness in Dechlorosoma suillum PS around Dsui_3079

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3078 and Dsui_3079 are separated by 89 nucleotidesDsui_3079 and Dsui_3080 are separated by 145 nucleotidesDsui_3080 and Dsui_3081 are separated by 141 nucleotides Dsui_3078: Dsui_3078 - methyl-accepting chemotaxis protein, at 3,293,547 to 3,295,166 _3078 Dsui_3079: Dsui_3079 - serine/threonine protein kinase, at 3,295,256 to 3,296,653 _3079 Dsui_3080: Dsui_3080 - molecular chaperone GrpE (heat shock protein), at 3,296,799 to 3,297,356 _3080 Dsui_3081: Dsui_3081 - chaperone protein DnaK, at 3,297,498 to 3,299,429 _3081 Position (kb) 3295 3296 3297Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3294.409 kb on + strand, within Dsui_3078at 3294.422 kb on - strand, within Dsui_3078at 3294.442 kb on - strand, within Dsui_3078at 3294.513 kb on - strand, within Dsui_3078at 3294.533 kb on - strand, within Dsui_3078at 3294.586 kb on + strand, within Dsui_3078at 3294.661 kb on - strand, within Dsui_3078at 3294.839 kb on + strand, within Dsui_3078at 3294.882 kb on + strand, within Dsui_3078at 3294.901 kb on - strand, within Dsui_3078at 3294.971 kb on - strand, within Dsui_3078at 3295.029 kb on + strandat 3295.039 kb on + strandat 3295.064 kb on - strandat 3295.160 kb on + strandat 3295.168 kb on - strandat 3295.486 kb on + strand, within Dsui_3079at 3295.494 kb on - strand, within Dsui_3079at 3295.494 kb on - strand, within Dsui_3079at 3295.501 kb on + strand, within Dsui_3079at 3295.509 kb on - strand, within Dsui_3079at 3295.552 kb on + strand, within Dsui_3079at 3295.555 kb on - strand, within Dsui_3079at 3295.568 kb on - strand, within Dsui_3079at 3295.639 kb on + strandat 3295.692 kb on + strand, within Dsui_3079at 3295.712 kb on + strand, within Dsui_3079at 3295.759 kb on + strand, within Dsui_3079at 3295.783 kb on - strand, within Dsui_3079at 3295.783 kb on - strand, within Dsui_3079at 3295.818 kb on + strand, within Dsui_3079at 3295.826 kb on - strand, within Dsui_3079at 3295.845 kb on - strand, within Dsui_3079at 3295.934 kb on + strand, within Dsui_3079at 3295.942 kb on - strand, within Dsui_3079at 3295.952 kb on + strand, within Dsui_3079at 3295.975 kb on - strand, within Dsui_3079at 3296.040 kb on - strand, within Dsui_3079at 3296.073 kb on + strandat 3296.073 kb on + strand, within Dsui_3079at 3296.073 kb on + strand, within Dsui_3079at 3296.073 kb on + strandat 3296.073 kb on + strandat 3296.073 kb on + strandat 3296.073 kb on + strand, within Dsui_3079at 3296.073 kb on + strand, within Dsui_3079at 3296.075 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.081 kb on - strand, within Dsui_3079at 3296.145 kb on + strand, within Dsui_3079at 3296.147 kb on + strandat 3296.147 kb on - strand, within Dsui_3079at 3296.188 kb on - strand, within Dsui_3079at 3296.261 kb on + strand, within Dsui_3079at 3296.261 kb on + strand, within Dsui_3079at 3296.274 kb on - strand, within Dsui_3079at 3296.315 kb on - strand, within Dsui_3079at 3296.328 kb on + strand, within Dsui_3079at 3296.328 kb on + strandat 3296.333 kb on + strandat 3296.336 kb on - strand, within Dsui_3079at 3296.341 kb on - strand, within Dsui_3079at 3296.371 kb on - strand, within Dsui_3079at 3296.379 kb on - strand, within Dsui_3079at 3296.384 kb on + strand, within Dsui_3079at 3296.386 kb on + strand, within Dsui_3079at 3296.547 kb on - strandat 3296.565 kb on - strandat 3296.567 kb on - strandat 3296.625 kb on + strandat 3296.662 kb on - strandat 3296.692 kb on + strandat 3296.704 kb on + strandat 3296.713 kb on - strandat 3296.921 kb on + strand, within Dsui_3080at 3297.341 kb on + strandat 3297.341 kb on + strandat 3297.479 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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3,294,409 + Dsui_3078 0.53 +0.9
3,294,422 - Dsui_3078 0.54 -2.5
3,294,442 - Dsui_3078 0.55 -0.8
3,294,513 - Dsui_3078 0.60 +0.2
3,294,533 - Dsui_3078 0.61 -0.8
3,294,586 + Dsui_3078 0.64 +1.0
3,294,661 - Dsui_3078 0.69 +0.7
3,294,839 + Dsui_3078 0.80 +2.8
3,294,882 + Dsui_3078 0.82 +1.4
3,294,901 - Dsui_3078 0.84 -0.5
3,294,971 - Dsui_3078 0.88 +0.3
3,295,029 + +1.9
3,295,039 + +0.7
3,295,064 - +0.7
3,295,160 + +0.1
3,295,168 - +0.4
3,295,486 + Dsui_3079 0.16 -0.3
3,295,494 - Dsui_3079 0.17 +0.9
3,295,494 - Dsui_3079 0.17 +0.5
3,295,501 + Dsui_3079 0.18 +0.4
3,295,509 - Dsui_3079 0.18 +0.5
3,295,552 + Dsui_3079 0.21 +0.5
3,295,555 - Dsui_3079 0.21 +0.2
3,295,568 - Dsui_3079 0.22 +2.1
3,295,639 + -2.2
3,295,692 + Dsui_3079 0.31 -0.7
3,295,712 + Dsui_3079 0.33 -1.2
3,295,759 + Dsui_3079 0.36 -0.7
3,295,783 - Dsui_3079 0.38 +0.7
3,295,783 - Dsui_3079 0.38 +0.5
3,295,818 + Dsui_3079 0.40 -3.8
3,295,826 - Dsui_3079 0.41 +0.6
3,295,845 - Dsui_3079 0.42 +0.4
3,295,934 + Dsui_3079 0.48 -2.0
3,295,942 - Dsui_3079 0.49 +0.9
3,295,952 + Dsui_3079 0.50 -2.6
3,295,975 - Dsui_3079 0.51 +0.3
3,296,040 - Dsui_3079 0.56 +0.6
3,296,073 + -2.7
3,296,073 + Dsui_3079 0.58 -1.0
3,296,073 + Dsui_3079 0.58 -0.0
3,296,073 + -1.9
3,296,073 + -1.6
3,296,073 + -2.2
3,296,073 + Dsui_3079 0.58 -2.3
3,296,073 + Dsui_3079 0.58 -1.7
3,296,075 - Dsui_3079 0.59 +0.6
3,296,081 - Dsui_3079 0.59 -0.5
3,296,081 - Dsui_3079 0.59 +1.1
3,296,081 - Dsui_3079 0.59 +1.6
3,296,081 - Dsui_3079 0.59 +0.6
3,296,081 - Dsui_3079 0.59 +1.5
3,296,081 - Dsui_3079 0.59 +0.8
3,296,081 - Dsui_3079 0.59 +1.1
3,296,145 + Dsui_3079 0.64 -2.0
3,296,147 + +3.0
3,296,147 - Dsui_3079 0.64 +0.5
3,296,188 - Dsui_3079 0.67 +0.5
3,296,261 + Dsui_3079 0.72 -0.2
3,296,261 + Dsui_3079 0.72 -3.2
3,296,274 - Dsui_3079 0.73 +1.0
3,296,315 - Dsui_3079 0.76 +0.5
3,296,328 + Dsui_3079 0.77 -2.8
3,296,328 + -0.6
3,296,333 + -2.8
3,296,336 - Dsui_3079 0.77 -0.4
3,296,341 - Dsui_3079 0.78 +0.9
3,296,371 - Dsui_3079 0.80 +0.0
3,296,379 - Dsui_3079 0.80 +0.4
3,296,384 + Dsui_3079 0.81 -1.4
3,296,386 + Dsui_3079 0.81 +0.7
3,296,547 - +0.1
3,296,565 - +0.1
3,296,567 - +1.0
3,296,625 + -2.8
3,296,662 - +1.2
3,296,692 + +0.4
3,296,704 + -2.8
3,296,713 - -1.1
3,296,921 + Dsui_3080 0.22 -3.7
3,297,341 + +0.2
3,297,341 + +0.5
3,297,479 + -0.3

Or see this region's nucleotide sequence